lineage | Count |
---|---|
lineage2.2.2 | 7 |
lineage2.2.1 | 18 |
lineage4.3.2.1 | 6 |
lineage3.1 | 1 |
lineage3 | 1 |
lineage1.2.2.2 | 1 |
lineage4.8 | 4 |
lineage4.3.2 | 1 |
lineage4.1.2.1 | 1 |
lineage4.6.4 | 1 |
lineage4.3.4.2 | 2 |
lineage4.6.1.1 | 1 |
lineage4 | 1 |
lineage4.3.4.1 | 1 |
lineage4.6.1.2 | 1 |
lineage4.7 | 1 |
spoligotype | Count |
---|---|
None | 48 |
ID | Drug resistance | Lineage | Country iso2 | ERR1873502 | MDR-TB | lineage2.2.2 | za | ERR1873451 | Pre-XDR-TB | lineage2.2.1 | za | ERR1873484 | Pre-XDR-TB | lineage2.2.1 | za | ERR1873512 | Pre-XDR-TB | lineage4.3.2.1 | za | ERR1034685 | HR-TB | lineage3.1 | in | ERR1035169 | Pre-XDR-TB | lineage2.2.1 | sa | ERR1034658 | Pre-XDR-TB | lineage3 | bg | ERR1873500 | MDR-TB | lineage2.2.2 | za | ERR1034701 | Sensitive | lineage1.2.2.2 | in | SRR4037614 | Sensitive | lineage4.3.2.1 | za | ERR1873509 | Pre-XDR-TB | lineage2.2.1 | za | ERR1873457 | Pre-XDR-TB | lineage2.2.1 | za | ERR1873498 | MDR-TB | lineage2.2.2 | za | SRR2024922 | Pre-XDR-TB | lineage2.2.1 | cn | ERR1873487 | Pre-XDR-TB | lineage2.2.1 | za | ERR1873488 | Pre-XDR-TB | lineage2.2.1 | za | ERR1034653 | MDR-TB | lineage4.8 | bg | ERR1873520 | Pre-XDR-TB | lineage2.2.2 | za | SRR2024990 | MDR-TB | lineage2.2.1 | cn | ERR1873560 | Pre-XDR-TB | lineage2.2.1 | None | ERR1035350 | MDR-TB | lineage4.3.2 | br | SRR1723638 | Pre-XDR-TB | lineage2.2.1 | cn | ERR3340729 | Sensitive | lineage4.3.2.1 | za | ERR1873556 | Pre-XDR-TB | lineage2.2.1 | za | ERR1034662 | Pre-XDR-TB | lineage4.1.2.1 | bg | ERR1035185 | Sensitive | lineage4.8 | pt | ERR1035348 | Pre-XDR-TB | lineage4.6.4 | br | SRR4037885 | Sensitive | lineage4.3.2.1 | None | ERR1034663 | MDR-TB | lineage4.8 | bg | ERR1034666 | MDR-TB | lineage2.2.1 | bg | ERR1035240 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR1873508 | HR-TB | lineage2.2.1 | za | ERR1873495 | Pre-XDR-TB | lineage2.2.2 | za | ERR1199094 | HR-TB | lineage4.6.1.1 | ug | ERR1034665 | MDR-TB | lineage4.8 | bg | ERR1034661 | MDR-TB | lineage4 | bg | ERR1035351 | MDR-TB | lineage4.3.4.1 | br | ERR1873469 | Pre-XDR-TB | lineage2.2.1 | za | ERR1199097 | MDR-TB | lineage4.6.1.2 | ug | ERR1035186 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR1873452 | Pre-XDR-TB | lineage2.2.2 | za | ERR1035284 | Pre-XDR-TB | lineage4.7 | br | ERR1873499 | Pre-XDR-TB | lineage2.2.1 | za | ERR1873442 | Pre-XDR-TB | lineage2.2.1 | za | ERR1873483 | MDR-TB | lineage4.3.2.1 | za | ERR3340705 | Sensitive | lineage4.3.2.1 | za | ERR1873491 | Pre-XDR-TB | lineage2.2.1 | za | ERR1873507 | Pre-XDR-TB | lineage2.2.2 | za |
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