lineage | Count |
---|---|
lineage2.2.1 | 57 |
lineage4.1.2.1 | 20 |
lineage4.3.3 | 43 |
lineage2.2.1.1 | 6 |
lineage3 | 44 |
lineage4.3 | 1 |
lineage4.2.1.1 | 6 |
lineage4.8 | 8 |
lineage2.2 | 1 |
lineage4.2.1 | 16 |
lineage4.3.2 | 2 |
lineage4.3.4.2.1 | 6 |
lineage4.4.1 | 1 |
lineage4.5 | 6 |
lineage3.1.2 | 8 |
lineage2.2.1.2 | 3 |
lineage1.1.2 | 2 |
lineage4.3.4.2 | 6 |
lineage4.6.1.2 | 4 |
lineage4.2.2.2 | 2 |
lineage1.2.2.2 | 3 |
lineage3.1 | 6 |
lineage4.4.2 | 6 |
lineage3.1.2.1 | 4 |
lineage4.3.3;lineage2.2.1 | 1 |
lineage4.1.1.3 | 3 |
lineage4.1.2.1.1 | 1 |
lineage5.2 | 1 |
lineage4.2.2.1 | 2 |
lineage2.2.2 | 10 |
lineage4.1.1.1 | 3 |
lineage4.4.1.1.1 | 1 |
lineage4.2.2 | 2 |
lineage4.6.2.2 | 1 |
lineage4.9 | 1 |
lineage1.1.3 | 1 |
lineage4.4.1.1 | 1 |
lineage4.3.3;lineage4.3.2 | 1 |
lineage4.8.1;lineage4.6.1.2 | 1 |
lineage4.1.3 | 1 |
lineage4.3.4.1 | 4 |
lineage4.3.4.2;lineage2.2.1 | 1 |
lineage4.3.1 | 1 |
lineage4 | 1 |
lineage4.9.1 | 1 |
lineage4.1.2 | 1 |
lineage4.7 | 1 |
lineage4.6.5 | 1 |
spoligotype | Count |
---|---|
None | 303 |
ID | Drug resistance | Lineage | Country iso2 | ERR4798760 | Pre-XDR-TB | lineage2.2.1 | in | SAMN02584619 | Pre-XDR-TB | lineage2.2.1 | md | ERR1035305 | MDR-TB | lineage4.1.2.1 | br | ERR4822599 | XDR-TB | lineage4.3.3 | de | SAMN02628493 | Pre-XDR-TB | lineage2.2.1 | ir | ERR4822074 | MDR-TB | lineage2.2.1 | gb | ERR7911489 | MDR-TB | lineage2.2.1.1 | vn | ERR2516451 | MDR-TB | lineage4.1.2.1 | pe | ERR4798249 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796392 | Pre-XDR-TB | lineage3 | in | ERR4797936 | MDR-TB | lineage4.3 | in | ERR7737725 | MDR-TB | lineage4.3.3 | None | ERR4828861 | Pre-XDR-TB | lineage3 | None | ERR10867786 | MDR-TB | lineage4.2.1.1 | None | ERR7361998 | MDR-TB | lineage4.1.2.1 | None | ERR4797508 | MDR-TB | lineage2.2.1 | in | ERR4814849 | MDR-TB | lineage2.2.1 | gb | ERR9634282 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR20139560 | MDR-TB | lineage4.8 | None | SRR15014667 | MDR-TB | lineage2.2 | None | SRR23310903 | MDR-TB | lineage4.2.1 | None | SRR23310897 | MDR-TB | lineage4.2.1 | None | ERR2677416 | XDR-TB | lineage4.3.3 | de | SRR23310997 | MDR-TB | lineage4.2.1 | None | SRR23340066 | MDR-TB | lineage4.2.1.1 | None | SRR23340068 | MDR-TB | lineage4.2.1.1 | None | ERR1035336 | MDR-TB | lineage4.3.2 | br | ERR4799148 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798012 | Pre-XDR-TB | lineage3 | in | ERR5917702 | MDR-TB | lineage4.2.1 | by | SAMN02403589 | MDR-TB | lineage4.3.4.2.1 | za | ERR4812954 | HR-TB | lineage4.4.1 | pe | ERR3014590 | Pre-XDR-TB | lineage4.8 | None | ERR2515224 | XDR-TB | lineage2.2.1 | za | SRR8651617 | Pre-XDR-TB | lineage4.5 | None | ERR4816210 | MDR-TB | lineage3.1.2 | gb | ERR2516365 | MDR-TB | lineage2.2.1 | be | ERR4797359 | Pre-XDR-TB | lineage2.2.1 | in | ERR2515724 | MDR-TB | lineage4.3.3 | za | ERR2516031 | MDR-TB | lineage4.3.3 | za | SAMN02586057 | Pre-XDR-TB | lineage4.3.3 | za | ERR2510293 | Pre-XDR-TB | lineage2.2.1.2 | pk | ERR6358844 | MDR-TB | lineage4.3.4.2.1 | None | SRR8380857 | HR-TB | lineage1.1.2 | in | ERR2510506 | MDR-TB | lineage3 | pk | ERR4814534 | MDR-TB | lineage3.1.2 | gb | ERR4829379 | MDR-TB | lineage4.3.4.2 | it | ERR2510403 | Pre-XDR-TB | lineage3 | pk | SRR8651656 | Pre-XDR-TB | lineage2.2.1 | cn | ERR2707083 | MDR-TB | lineage4.6.1.2 | cd | ERR3287429 | Pre-XDR-TB | lineage4.3.3 | pe | ERR3287379 | MDR-TB | lineage4.3.3 | pe | ERR4797607 | Pre-XDR-TB | lineage2.2.1 | in | ERR3287571 | MDR-TB | lineage4.1.2.1 | None | ERR4821571 | MDR-TB | lineage3.1.2 | None | ERR3287523 | MDR-TB | lineage2.2.1 | None | ERR1023410 | MDR-TB | lineage4.2.2.2 | None | ERR2707100 | MDR-TB | lineage4.3.3 | cd | SAMN02053746 | MDR-TB | lineage4.3.3 | za | ERR4799731 | Pre-XDR-TB | lineage1.2.2.2 | in | ERR2510532 | MDR-TB | lineage3 | pk | ERR1034594 | MDR-TB | lineage3 | pk | ERR2510312 | MDR-TB | lineage4.5 | pk | SRR2024970 | Pre-XDR-TB | lineage2.2.1 | cn | ERR2510469 | Pre-XDR-TB | lineage3 | pk | SAMN02414911 | MDR-TB | lineage4.8 | se | ERR4831459 | MDR-TB | lineage1.2.2.2 | None | ERR4799412 | Pre-XDR-TB | lineage3 | in | ERR2041750 | MDR-TB | lineage4.1.2.1 | rs | ERR8975783 | Pre-XDR-TB | lineage4.3.3 | None | ERR4822606 | Pre-XDR-TB | lineage3.1 | de | ERR7911047 | Pre-XDR-TB | lineage4.2.1 | md | SRR847784 | MDR-TB | lineage4.3.3 | za | ERR1034585 | Pre-XDR-TB | lineage3 | pk | SRR671719 | MDR-TB | lineage2.2.1 | cn | SAMN02586011 | MDR-TB | lineage4.3.3 | za | ERR4799263 | Pre-XDR-TB | lineage4.1.2.1 | in | ERR4817254 | MDR-TB | lineage2.2.1 | gb | ERR4799102 | Pre-XDR-TB | lineage3 | in | ERR4810766 | MDR-TB | lineage4.4.2 | cn | ERR4798871 | HR-TB | lineage3.1.2.1 | in | ERR8665862 | Pre-XDR-TB | lineage4.3.3;lineage2.2.1 | None | ERR4797025 | Pre-XDR-TB | lineage3 | in | ERR8665966 | MDR-TB | lineage4.2.1.1 | None | ERR4797168 | Pre-XDR-TB | lineage3.1.2.1 | in | ERR2510413 | Pre-XDR-TB | lineage4.5 | pk | ERR3287813 | MDR-TB | lineage4.3.3 | pe | SRR8651625 | MDR-TB | lineage4.4.2 | cn | ERR2510600 | Pre-XDR-TB | lineage3 | pk | SAMN03246408 | MDR-TB | lineage2.2.1 | cn | ERR2516793 | MDR-TB | lineage2.2.1 | gb | ERR8975781 | XDR-TB | lineage4.1.1.3 | None | ERR760750 | MDR-TB | lineage4.1.2.1.1 | ar | ERR2510660 | Pre-XDR-TB | lineage3 | it | ERR4808971 | MDR-TB | lineage4.3.3 | None | ERR2510286 | MDR-TB | lineage3 | pk | ERR2706945 | MDR-TB | lineage5.2 | cd | ERR3287651 | MDR-TB | lineage4.3.3 | pe | ERR2516596 | MDR-TB | lineage3 | nl | SRR5818580 | MDR-TB | lineage4.2.2.1 | dj | ERR2041757 | MDR-TB | lineage4.1.2.1 | rs | SAMN02584622 | MDR-TB | lineage4.2.1 | md | ERR2677452 | Pre-XDR-TB | lineage4.2.1 | de | SAMN02403477 | MDR-TB | lineage2.2.2 | za | ERR4830637 | Pre-XDR-TB | lineage2.2.1 | tm | SAMN02586097 | MDR-TB | lineage4.3.3 | za | SAMN02403478 | MDR-TB | lineage2.2.2 | za | ERR4829636 | MDR-TB | lineage2.2.2 | it | ERR4830804 | MDR-TB | lineage4.2.2.1 | et | ERR4800342 | HR-TB | lineage3.1.2.1 | in | ERR2510628 | Pre-XDR-TB | lineage3 | None | ERR2677447 | MDR-TB | lineage4.2.2.2 | de | ERR4828854 | MDR-TB | lineage4.1.1.1 | None | SRR671753 | MDR-TB | lineage2.2.2 | cn | SAMN02403507 | MDR-TB | lineage4.4.1.1.1 | za | ERR4810938 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4829824 | Pre-XDR-TB | lineage3 | it | ERR751401 | MDR-TB | lineage4.3.3 | pe | ERR2677434 | MDR-TB | lineage3.1 | de | ERR2515560 | MDR-TB | lineage4.3.3 | za | ERR2510534 | Pre-XDR-TB | lineage2.2.1.2 | pk | ERR7911750 | MDR-TB | lineage4.1.2.1 | us | ERR3287768 | MDR-TB | lineage4.3.4.2 | pe | SAMN02584631 | MDR-TB | lineage4.2.1 | md | ERR7910980 | MDR-TB | lineage4.2.1 | md | ERR2510530 | Pre-XDR-TB | lineage3 | pk | ERR158589 | HR-TB | lineage2.2.1 | ru | ERR4810623 | Pre-XDR-TB | lineage2.2.1 | cn | ERR1213904 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR2179807 | MDR-TB | lineage4.2.2 | cn | SAMEA2535290 | Pre-XDR-TB | lineage2.2.1.1 | mm | SAMN02628509 | MDR-TB | lineage4.2.1 | ir | ERR8665959 | MDR-TB | lineage2.2.1 | None | ERR4817490 | HR-TB | lineage4.6.2.2 | gb | ERR2516566 | MDR-TB | lineage2.2.1 | nl | ERR4809230 | MDR-TB | lineage4.1.1.3 | za | ERR2510386 | MDR-TB | lineage3 | pk | ERR8975820 | Pre-XDR-TB | lineage4.3.3 | None | ERR4828952 | MDR-TB | lineage4.1.1.1 | None | ERR4822610 | Pre-XDR-TB | lineage3.1 | de | SRR6824453 | MDR-TB | lineage2.2.1 | cn | ERR4796807 | MDR-TB | lineage3 | in | ERR2677437 | MDR-TB | lineage3.1 | de | ERR2707079 | MDR-TB | lineage4.3.4.2 | cd | SRR1166171 | MDR-TB | lineage4.8 | ro | ERR8665891 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02628479 | MDR-TB | lineage4.2.1 | ir | ERR8665828 | Pre-XDR-TB | lineage2.2.1 | None | ERR108420 | Pre-XDR-TB | lineage2.2.1 | ru | SRR847780 | Pre-XDR-TB | lineage4.3.4.2.1 | za | ERR2515614 | Pre-XDR-TB | lineage4.3.3 | za | ERR4829144 | Pre-XDR-TB | lineage3 | pk | SRR1723803 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4812196 | Pre-XDR-TB | lineage4.3.3 | pe | ERR1199122 | MDR-TB | lineage4.6.1.2 | cd | ERR1034593 | Pre-XDR-TB | lineage3 | pk | SRR8651643 | MDR-TB | lineage4.4.2 | cn | SRR2024897 | Pre-XDR-TB | lineage2.2.1 | cn | SAMN02599089 | MDR-TB | lineage3 | None | SAMN02403455 | MDR-TB | lineage2.2.2 | za | ERR4813455 | MDR-TB | lineage4.3.3 | pe | ERR4822376 | Pre-XDR-TB | lineage2.2.1 | kg | ERR2707004 | MDR-TB | lineage4.3.4.2 | cd | ERR4798121 | MDR-TB | lineage4.3.3 | in | ERR2184309 | MDR-TB | lineage4.9 | pe | ERR221618 | MDR-TB | lineage4.3.4.2.1 | mw | SRR5709878 | MDR-TB | lineage2.2.1 | th | ERR4829724 | MDR-TB | lineage4.2.1 | it | SAMN02403454 | Pre-XDR-TB | lineage2.2.2 | za | SRR6824483 | Pre-XDR-TB | lineage2.2.1 | cn | SRR5709782 | RR-TB | lineage1.1.3 | th | ERR775372 | MDR-TB | lineage4.3.3 | pe | ERR4796975 | MDR-TB | lineage4.4.1.1 | in | ERR2510560 | Pre-XDR-TB | lineage3 | pk | SRR671838 | MDR-TB | lineage4.5 | cn | ERR2510629 | MDR-TB | lineage3 | pk | ERR4812774 | MDR-TB | lineage4.3.3;lineage4.3.2 | pe | ERR2510517 | Pre-XDR-TB | lineage3 | pk | ERR5917760 | MDR-TB | lineage2.2.1 | by | SAMEA3715558 | MDR-TB | lineage4.1.2.1 | rs | ERR2707219 | MDR-TB | lineage4.3.3 | cd | ERR6358762 | MDR-TB | lineage4.8.1;lineage4.6.1.2 | None | ERR3287444 | MDR-TB | lineage4.3.3 | pe | ERR2517008 | Pre-XDR-TB | lineage4.8 | gb | ERR2510418 | Pre-XDR-TB | lineage3 | pk | ERR845932 | MDR-TB | lineage2.2.1 | None | ERR4810984 | MDR-TB | lineage4.4.2 | cn | ERR4811494 | HR-TB | lineage4.2.2 | cn | SRR5709915 | MDR-TB | lineage4.4.2 | th | ERR2707001 | MDR-TB | lineage4.3.3 | cd | ERR7911501 | Pre-XDR-TB | lineage2.2.1.1 | vn | SAMN02599130 | MDR-TB | lineage3 | None | ERR4814816 | MDR-TB | lineage2.2.1 | gb | ERR2514760 | Pre-XDR-TB | lineage3 | gb | SRR6824449 | MDR-TB | lineage2.2.1 | cn | ERR4829967 | MDR-TB | lineage3 | None | ERR551575 | HR-TB | lineage2.2.1 | None | ERR221617 | MDR-TB | lineage4.3.4.2.1 | mw | ERR4829129 | HR-TB | lineage3.1 | None | ERR4829388 | MDR-TB | lineage4.1.2.1 | it | SAMN02360593 | Pre-XDR-TB | lineage2.2.2 | kr | ERR4809347 | Pre-XDR-TB | lineage4.3.3 | za | ERR4815372 | Pre-XDR-TB | lineage3 | gb | ERR2707221 | MDR-TB | lineage4.3.3 | cd | ERR751617 | MDR-TB | lineage4.3.3 | pe | ERR4797052 | MDR-TB | lineage1.2.2.2 | in | SRR6824329 | MDR-TB | lineage2.2.1 | cn | ERR4817202 | MDR-TB | lineage3.1.2 | gb | ERR2510135 | MDR-TB | lineage4.1.2.1 | pe | SRR5709821 | MDR-TB | lineage4.4.2 | th | ERR4797795 | Pre-XDR-TB | lineage3 | in | ERR2510441 | Pre-XDR-TB | lineage3 | pk | ERR4810622 | Pre-XDR-TB | lineage2.2.1 | cn | ERR2706926 | MDR-TB | lineage4.6.1.2 | cd | ERR2516698 | Pre-XDR-TB | lineage4.1.2.1 | pe | SRR5709950 | MDR-TB | lineage2.2.1 | th | SRR7517791 | MDR-TB | lineage4.1.3 | ci | ERR775335 | MDR-TB | lineage4.1.2.1 | pe | SAMN02053806 | MDR-TB | lineage4.3.3 | za | SAMN02585962 | Pre-XDR-TB | lineage4.3.3 | za | ERR7911270 | MDR-TB | lineage4.2.1 | md | ERR234607 | MDR-TB | lineage2.2.1 | ru | ERR4829127 | Pre-XDR-TB | lineage3 | pk | ERR2516424 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR751421 | MDR-TB | lineage4.1.2.1 | pe | ERR2184640 | HR-TB | lineage4.3.2 | None | ERR751619 | Pre-XDR-TB | lineage4.3.3 | pe | ERR4830911 | Pre-XDR-TB | lineage2.2.1 | np | ERR4813801 | Pre-XDR-TB | lineage4.3.4.1 | br | ERR4797192 | Pre-XDR-TB | lineage4.3.4.2;lineage2.2.1 | in | ERR2706932 | MDR-TB | lineage4.3.4.1 | cd | ERR2516405 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR4809038 | MDR-TB | lineage4.3.3 | za | ERR4797133 | MDR-TB | lineage1.1.2 | in | SAMN02403628 | MDR-TB | lineage2.2.2 | za | ERR8665958 | MDR-TB | lineage2.2.1 | None | ERR4822600 | XDR-TB | lineage4.3.3 | de | ERR3014597 | MDR-TB | lineage4.3.1 | tn | ERR1034586 | Pre-XDR-TB | lineage3.1.2 | pk | ERR2510303 | Pre-XDR-TB | lineage2.2.1.1 | pk | ERR3287832 | HR-TB | lineage4.3.3 | pe | ERR8665965 | MDR-TB | lineage4.2.1.1 | None | SAMN02628481 | Pre-XDR-TB | lineage2.2.1 | ir | ERR2864236 | MDR-TB | lineage4.3.4.1 | pt | ERR1034602 | Pre-XDR-TB | lineage3.1.2 | pk | SRR1166228 | MDR-TB | lineage4.8 | ro | ERR8975014 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR1213843 | HR-TB | lineage4 | kr | ERR2510324 | RR-TB | lineage3 | pk | ERR2516821 | MDR-TB | lineage3 | gb | ERR6358766 | MDR-TB | lineage4.6.1.2 | None | ERR4829708 | MDR-TB | lineage4.2.1 | it | ERR2510604 | Pre-XDR-TB | lineage3 | pk | ERR4830112 | Pre-XDR-TB | lineage2.2.1 | None | ERR7910907 | MDR-TB | lineage4.2.1 | md | ERR4830926 | Pre-XDR-TB | lineage2.2.1 | np | ERR7911485 | MDR-TB | lineage2.2.1 | vn | SRR2101505 | MDR-TB | lineage4.9.1 | None | ERR2516597 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR1034608 | Pre-XDR-TB | lineage3 | pk | ERR4798578 | MDR-TB | lineage2.2.1 | in | ERR4811283 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4822609 | Pre-XDR-TB | lineage3.1 | de | ERR2706949 | MDR-TB | lineage4.3.4.2 | cd | ERR1213852 | HR-TB | lineage4.5 | kr | SAMN02599061 | MDR-TB | lineage3 | None | ERR2510578 | Pre-XDR-TB | lineage3 | pk | SAMN02403583 | MDR-TB | lineage4.3.3 | za | ERR3287780 | HR-TB | lineage4.8 | pe | SAMN02360558 | Pre-XDR-TB | lineage2.2.2 | kr | ERR108514 | MDR-TB | lineage2.2.1 | ru | SRR1166321 | Pre-XDR-TB | lineage4.8 | ro | ERR4797059 | Pre-XDR-TB | lineage4.1.2 | in | ERR1034999 | Pre-XDR-TB | lineage4.7 | za | SAMN02053803 | MDR-TB | lineage4.3.3 | za | ERR5917752 | MDR-TB | lineage4.2.1.1 | by | ERR4798355 | MDR-TB | lineage2.2.1 | in | ERR4828975 | MDR-TB | lineage2.2.2 | None | ERR2516549 | Pre-XDR-TB | lineage3 | nl | SRR5818574 | MDR-TB | lineage4.6.5 | dj | ERR038745 | MDR-TB | lineage4.3.4.2.1 | ug | ERR1034581 | Pre-XDR-TB | lineage3.1.2 | pk | ERR4809254 | MDR-TB | lineage2.2.1.1 | za | SAMN02350441 | MDR-TB | lineage4.3.3 | za | SRR5065250 | MDR-TB | lineage2.2.1 | vn | ERR775318 | MDR-TB | lineage4.3.3 | pe | ERR4797753 | XDR-TB | lineage3 | in | ERR2510538 | Pre-XDR-TB | lineage4.2.1 | pk | ERR234629 | MDR-TB | lineage2.2.1 | ru | ERR8975459 | HR-TB | lineage4.1.1.1 | None | ERR4822324 | XDR-TB | lineage4.3.3 | de | SAMN02419583 | Pre-XDR-TB | lineage2.2.1 | by | ERR4830072 | MDR-TB | lineage2.2.1 | None | ERR4829393 | MDR-TB | lineage4.1.2.1 | it | ERR4831487 | Pre-XDR-TB | lineage3 | None | ERR4829749 | MDR-TB | lineage4.1.2.1 | it | ERR2515153 | Pre-XDR-TB | lineage4.3.3 | za | ERR4829183 | MDR-TB | lineage3.1.2 | it | ERR2706929 | MDR-TB | lineage4.3.4.1 | cd | ERR4800379 | Pre-XDR-TB | lineage3.1.2.1 | in | ERR2516939 | MDR-TB | lineage4.5 | gb | ERR4831599 | MDR-TB | lineage2.2.1.1 | vn | ERR4811370 | Pre-XDR-TB | lineage2.2.1.2 | cn |
---|