SRR29096569
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9738538
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR29093636
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8976053
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR29126666
|
HR-TB
|
lineage4.3.4.1
|
None
|
SRR29094090
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11972318
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2864244
|
MDR-TB
|
lineage2.2.1
|
pt
|
SRR15014644
|
MDR-TB
|
lineage3.1.2
|
None
|
SRR29097095
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096417
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772772
|
Pre-XDR-TB
|
lineage3.1.2
|
None
|
SRR29093825
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830440
|
MDR-TB
|
lineage1.1.1.1
|
vn
|
SRR29096799
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093314
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539758
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16370484
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093617
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093891
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096112
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15014612
|
Pre-XDR-TB
|
lineage3.1.2
|
None
|
SRR16156798
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15014610
|
MDR-TB
|
lineage3.1.2
|
None
|
SRR29093501
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4011063
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24710023
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096216
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872172
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR29096302
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9119446
|
MDR-TB
|
lineage1.1.1.1
|
None
|
SRR29096616
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9807039
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29017156
|
MDR-TB
|
lineage3
|
None
|
SRR11662425
|
MDR-TB
|
lineage1.1.1
|
None
|
ERR2515371
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR4011061
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1873447
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR4011075
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551926_ERR551925
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29096855
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29094081
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9806878
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29094012
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR29274142
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR29093699
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911539
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR7911652
|
MDR-TB
|
lineage2.2.1
|
za
|
SRR29539226
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093259
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911547
|
Pre-XDR-TB
|
lineage2.2.1;lineage2.2.2
|
za
|
ERR13284976
|
MDR-TB
|
lineage1.1.1.1
|
None
|
SRR29096372
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29772764
|
MDR-TB
|
lineage3.1.2
|
None
|
SRR29096839
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10397168
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096351
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093854
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832675
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284266
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872099
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR29093618
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093832
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28706429
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6257056
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4553559
|
MDR-TB
|
|
None
|
ERR9119830
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093596
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096321
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096947
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911611
|
XDR-TB
|
lineage2.2.1
|
za
|
ERR2307625
|
HR-TB
|
lineage2.2.1
|
None
|
ERR1034638
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1873562
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR5865954
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1873432
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1034880
|
MDR-TB
|
lineage2.2.1
|
pt
|
SRR29681420
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5987274
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR133955
|
HR-TB
|
lineage2.2.1
|
ru
|
ERR7911619
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR13284128
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR29093283
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.2.1
|
None
|
SRR14801788
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11972250
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR11081128
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29093635
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096377
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR133913
|
HR-TB
|
lineage2.2.1
|
ru
|
ERR553233
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093884
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11972262
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4423781
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR8774512
|
MDR-TB
|
lineage4.6.2.2
|
None
|
DRR130164
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232703
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29056303
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872232
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR26399529
|
MDR-TB
|
lineage1.1.1.1
|
None
|
SRR10869232
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6832240
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4423782
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR10525336
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR29093537
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093506
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093354
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393333
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29094068
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096511
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24256062
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR29093846
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992618
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13191074
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29096827
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096349
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15014775
|
MDR-TB
|
lineage3.1.2
|
None
|
ERR1034664
|
MDR-TB
|
lineage4.2.2.1
|
bg
|
SRR29093489
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025608
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156777
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093276
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29273822
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR29096489
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29017590
|
Pre-XDR-TB
|
lineage1.1.3.1
|
None
|
SRR29127023
|
HR-TB
|
lineage4.3.4.1
|
None
|
SRR29772773
|
Pre-XDR-TB
|
lineage3.1.2
|
None
|
SRR29093263
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1023465
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4829024
|
HR-TB
|
lineage4.3.4.1
|
None
|
ERR1873509
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR8025626
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29094075
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096352
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096596
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830975
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR5866450
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28923835
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351553
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR28706449
|
HR-TB
|
lineage2.2.1
|
None
|
SRR27069418
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR5866449
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813576
|
RR-TB
|
lineage4.3.3
|
None
|
ERR5758371
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096347
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539220
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2516589
|
MDR-TB
|
lineage4.3.2
|
pe
|
SRR15014648
|
MDR-TB
|
lineage3.1.2
|
None
|
ERR1873560
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827974
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3639733
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4011086
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11082540
|
MDR-TB
|
lineage1.1.1.1
|
None
|
SRR6831819
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11972254
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6511641
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7585399
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4011058
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119539
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR29093757
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096668
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119570
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR29094011
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096519
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831536
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR16156802
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093540
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10112888
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4011065
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8774514
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR15014690
|
MDR-TB
|
lineage3.1.2
|
None
|
SRR29093606
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872133
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR4800011
|
MDR-TB
|
lineage3
|
in
|
SRR29096856
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865691
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911142
|
MDR-TB
|
lineage1.1.1.1
|
vn
|
SRR29096612
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093568
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093294
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29274113
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR29093656
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156799
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093696
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10112836
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093335
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16088408
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156733
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8025455
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1034637
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29681312
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8758881
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284228
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2515937
|
MDR-TB
|
lineage4.1.2.1
|
za
|
SRR29093765
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29093655
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539747
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539140
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096499
|
MDR-TB
|
lineage2.2.1;lineage4.2.2.2
|
None
|
SRR29914421
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR29093763
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29273693
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR29096479
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534294
|
MDR-TB
|
lineage4.3.3
|
uz
|
ERR10748114
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.8.1
|
None
|
ERR1034644
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29094019
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096858
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911526
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR29093562
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096629
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093840
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11972430
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29772611
|
MDR-TB
|
lineage3.1.2
|
None
|
SRR16087946
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2307598
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11972290
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831535
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29096484
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13194049
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR8774569
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28646117
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR6824651
|
Pre-XDR-TB
|
lineage2.2.1.1
|
cn
|
ERR8025609
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11773761
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2307632
|
HR-TB
|
lineage2.2.1
|
None
|
SRR21747012
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7516441
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11972193
|
Sensitive
|
lineage2.2.1
|
None
|
SRR10869258
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1723701
|
Pre-XDR-TB
|
lineage2.2.1.1
|
cn
|
ERR983228
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715177
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28706542
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096952
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096597
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290788
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR6930885
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15014680
|
MDR-TB
|
lineage3.1.2
|
None
|
SRR29094002
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11972312
|
HR-TB
|
lineage2.2.1
|
None
|
SRR21576725
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4011057
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15014767
|
MDR-TB
|
lineage3.1.2
|
None
|
ERR11043525
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR5865692
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800385
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR9119626
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR9119505
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR10869280
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551925
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR15014702
|
MDR-TB
|
lineage3.1.2
|
None
|
SRR15722998
|
Pre-XDR-TB
|
lineage4.2.2
|
None
|
ERR1193863
|
MDR-TB
|
lineage4.3.3
|
uz
|
ERR4797415
|
Pre-XDR-TB
|
lineage1.1.2
|
in
|
ERR9992676
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9993142
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093563
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093666
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096816
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827509
|
MDR-TB
|
lineage2.2.1;lineage3;lineage4.3.2
|
None
|
SRR29093576
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284584
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096337
|
MDR-TB
|
lineage2.2.1
|
None
|