lineage | Count |
---|---|
lineage2.2.1 | 82 |
lineage2.2.1.1 | 3 |
lineage4.2.2 | 1 |
lineage4.3.3 | 5 |
lineage3.1.2 | 9 |
lineage1.1.1.1 | 4 |
lineage4.1.2 | 1 |
lineage4.1.2.1 | 2 |
lineage4.3.2 | 1 |
lineage4.3.4.1 | 1 |
lineage4.6.2.2 | 12 |
lineage4.4.1.1 | 4 |
lineage4.2.2.1 | 1 |
lineage4.8.1;lineage2.2.1 | 1 |
1 | |
lineage3 | 1 |
lineage1.1.2 | 2 |
lineage2.2.2;lineage2.2.1 | 1 |
spoligotype | Count |
---|---|
None | 132 |
ID | Drug resistance | Lineage | Country iso2 | SRR11972193 | MDR-TB | lineage2.2.1 | None | SRR11972262 | MDR-TB | lineage2.2.1 | None | SRR11972250 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR11972254 | MDR-TB | lineage2.2.1 | None | SRR11972312 | MDR-TB | lineage2.2.1 | None | SRR11972290 | MDR-TB | lineage2.2.1 | None | SRR21576725 | MDR-TB | lineage2.2.1 | None | SRR11972318 | MDR-TB | lineage2.2.1 | None | SRR11972430 | MDR-TB | lineage2.2.1 | None | SRR15722998 | Pre-XDR-TB | lineage4.2.2 | None | SRR16087946 | MDR-TB | lineage4.3.3 | None | SRR18715177 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232703 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801788 | MDR-TB | lineage2.2.1 | None | SRR15014612 | Pre-XDR-TB | lineage3.1.2 | None | SRR15014610 | MDR-TB | lineage3.1.2 | None | SRR15014644 | MDR-TB | lineage3.1.2 | None | SRR15014648 | MDR-TB | lineage3.1.2 | None | SRR15014680 | MDR-TB | lineage3.1.2 | None | SRR15014690 | MDR-TB | lineage3.1.2 | None | SRR15014702 | MDR-TB | lineage3.1.2 | None | SRR15014767 | MDR-TB | lineage3.1.2 | None | SRR15014775 | MDR-TB | lineage3.1.2 | None | SRR16156733 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156777 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156799 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156802 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156798 | Pre-XDR-TB | lineage2.2.1 | None | SRR16370484 | Pre-XDR-TB | lineage2.2.1 | None | ERR11082540 | MDR-TB | lineage1.1.1.1 | None | SRR21747012 | MDR-TB | lineage2.2.1 | None | ERR11081128 | MDR-TB | lineage4.3.3 | None | ERR8025608 | Pre-XDR-TB | lineage2.2.1 | None | ERR9807039 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025609 | Pre-XDR-TB | lineage2.2.1 | None | ERR9806878 | MDR-TB | lineage2.2.1 | None | ERR10112888 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025455 | Pre-XDR-TB | lineage2.2.1 | None | ERR10112836 | Pre-XDR-TB | lineage2.2.1 | None | ERR1873432 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025626 | Pre-XDR-TB | lineage2.2.1 | None | ERR5758371 | Pre-XDR-TB | lineage2.2.1 | None | SAMEA2534294 | MDR-TB | lineage4.3.3 | uz | ERR1873560 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813576 | RR-TB | lineage4.3.3 | None | SRR1723701 | Pre-XDR-TB | lineage2.2.1.1 | cn | SRR4035786 | HR-TB | lineage4.1.2 | None | ERR2515371 | Pre-XDR-TB | lineage2.2.1 | za | ERR1193863 | MDR-TB | lineage4.3.3 | uz | ERR1873447 | Pre-XDR-TB | lineage2.2.1 | za | ERR2515937 | MDR-TB | lineage4.1.2.1 | za | ERR2516589 | MDR-TB | lineage4.3.2 | pe | ERR1873509 | Pre-XDR-TB | lineage2.2.1 | za | ERR4827974 | Pre-XDR-TB | lineage2.2.1 | None | ERR1873562 | Pre-XDR-TB | lineage2.2.1 | za | ERR4829024 | HR-TB | lineage4.3.4.1 | None | ERR2864244 | MDR-TB | lineage2.2.1 | pt | SRR6511641 | MDR-TB | lineage2.2.1 | None | ERR4830440 | MDR-TB | lineage1.1.1.1 | vn | ERR4830975 | Pre-XDR-TB | lineage2.2.1 | np | SRR6257056 | MDR-TB | lineage2.2.1 | None | ERR4831536 | Pre-XDR-TB | lineage2.2.1 | None | ERR4872099 | MDR-TB | lineage4.6.2.2 | None | SRR6930885 | MDR-TB | lineage2.2.1 | None | ERR4831535 | Pre-XDR-TB | lineage2.2.1 | None | ERR4872133 | MDR-TB | lineage4.6.2.2 | None | SRR6831819 | MDR-TB | lineage2.2.1 | None | SRR6832240 | MDR-TB | lineage2.2.1 | None | ERR4872172 | MDR-TB | lineage4.6.2.2 | None | ERR4872232 | MDR-TB | lineage4.6.2.2 | None | DRR130164 | Pre-XDR-TB | lineage2.2.1 | None | SRR6832675 | MDR-TB | lineage2.2.1 | None | SRR9738538 | MDR-TB | lineage4.4.1.1 | None | SRR7585399 | Pre-XDR-TB | lineage2.2.1 | in | SRR6824651 | Pre-XDR-TB | lineage2.2.1.1 | cn | SRR7516441 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034637 | Pre-XDR-TB | lineage2.2.1 | None | ERR1023465 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034638 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034644 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034880 | MDR-TB | lineage2.2.1 | pt | ERR1034664 | MDR-TB | lineage4.2.2.1 | bg | ERR4011061 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748114 | Pre-XDR-TB | lineage4.8.1;lineage2.2.1 | None | ERR133913 | HR-TB | lineage2.2.1 | ru | ERR133955 | HR-TB | lineage2.2.1 | ru | ERR4011058 | MDR-TB | lineage2.2.1 | None | ERR11043525 | MDR-TB | lineage4.4.1.1 | None | ERR3639733 | MDR-TB | lineage4.4.1.1 | None | ERR4011063 | Pre-XDR-TB | lineage2.2.1 | None | ERR4011075 | Pre-XDR-TB | lineage2.2.1 | None | ERR4011057 | Pre-XDR-TB | lineage2.2.1 | None | ERR4011065 | Pre-XDR-TB | lineage2.2.1 | None | ERR4011086 | Pre-XDR-TB | lineage2.2.1 | None | ERR4553559 | MDR-TB | None | ERR4423781 | MDR-TB | lineage4.6.2.2 | None | ERR4423782 | MDR-TB | lineage4.6.2.2 | None | ERR4800011 | MDR-TB | lineage3 | in | ERR4797415 | Pre-XDR-TB | lineage1.1.2 | in | ERR4800385 | MDR-TB | lineage1.1.2 | None | ERR5865954 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865691 | MDR-TB | lineage2.2.1 | None | ERR5865692 | MDR-TB | lineage2.2.1 | None | ERR5866449 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866450 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911526 | Pre-XDR-TB | lineage2.2.1 | za | ERR5987274 | MDR-TB | lineage2.2.1 | None | ERR7911142 | MDR-TB | lineage1.1.1.1 | vn | ERR7911547 | Pre-XDR-TB | lineage2.2.2;lineage2.2.1 | za | ERR7911539 | Pre-XDR-TB | lineage2.2.1 | za | ERR7911619 | Pre-XDR-TB | lineage2.2.1 | za | ERR7911611 | Pre-XDR-TB | lineage2.2.1 | za | ERR9119626 | MDR-TB | lineage4.6.2.2 | None | ERR7911652 | MDR-TB | lineage2.2.1 | za | ERR8774514 | MDR-TB | lineage4.6.2.2 | None | ERR9119505 | MDR-TB | lineage4.6.2.2 | None | ERR9119570 | MDR-TB | lineage4.6.2.2 | None | ERR8774512 | MDR-TB | lineage4.6.2.2 | None | ERR8774569 | Pre-XDR-TB | lineage2.2.1 | None | ERR8976053 | MDR-TB | lineage4.1.2.1 | None | ERR9119446 | MDR-TB | lineage1.1.1.1 | None | ERR9119539 | MDR-TB | lineage4.6.2.2 | None | ERR983228 | MDR-TB | lineage2.2.1 | None | ERR9119830 | MDR-TB | lineage2.2.1 | None | ERR9992676 | Pre-XDR-TB | lineage2.2.1 | None | ERR9992618 | Pre-XDR-TB | lineage2.2.1 | None | SRR10397168 | Pre-XDR-TB | lineage2.2.1 | None | ERR9993142 | Pre-XDR-TB | lineage2.2.1 | None | SRR10525336 | MDR-TB | lineage4.4.1.1 | None | SRR10869258 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869280 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869232 | Pre-XDR-TB | lineage2.2.1 | None |
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