lineage | Count |
---|---|
lineage2.2.1 | 182 |
lineage4.4.1.1 | 10 |
lineage4.1.2.1 | 2 |
lineage3.1.2 | 13 |
lineage1.1.1.1 | 6 |
lineage4.6.2.2 | 12 |
lineage1.1.1 | 1 |
lineage4.3.3 | 10 |
lineage2.2.1.1 | 6 |
lineage1.1.3.1 | 1 |
lineage4.3.4.1 | 3 |
1 | |
lineage4.2.2 | 1 |
lineage2.2.1;lineage4.3.2.1 | 1 |
lineage3 | 2 |
lineage2.2.1;lineage4.2.2.2 | 1 |
lineage4.2.2.1 | 1 |
lineage2.2.1;lineage4.8.1 | 1 |
lineage2.2.2 | 2 |
lineage2.2.1;lineage2.2.2 | 1 |
lineage1.1.2 | 3 |
lineage4.5 | 1 |
lineage4.3.2 | 1 |
lineage2.2.1;lineage3;lineage4.3.2 | 1 |
spoligotype | Count |
---|---|
None | 263 |
ID | Drug resistance | Lineage | Country iso2 |
---|---|---|---|
SRR29096337 | MDR-TB | lineage2.2.1 | None |
SRR29096569 | MDR-TB | lineage2.2.1 | None |
SRR9738538 | MDR-TB | lineage4.4.1.1 | None |
ERR5987274 | MDR-TB | lineage2.2.1 | None |
SRR29096519 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29093636 | Pre-XDR-TB | lineage2.2.1 | None |
ERR8976053 | MDR-TB | lineage4.1.2.1 | None |
SRR11972318 | MDR-TB | lineage2.2.1 | None |
SRR15014644 | MDR-TB | lineage3.1.2 | None |
ERR4830440 | MDR-TB | lineage1.1.1.1 | vn |
ERR8774514 | MDR-TB | lineage4.6.2.2 | None |
SRR29093314 | MDR-TB | lineage2.2.1 | None |
ERR553233 | MDR-TB | lineage2.2.1 | None |
SRR29096112 | Pre-XDR-TB | lineage2.2.1 | None |
SRR11972262 | MDR-TB | lineage2.2.1 | None |
SRR15014612 | Pre-XDR-TB | lineage3.1.2 | None |
ERR4423781 | MDR-TB | lineage4.6.2.2 | None |
ERR8774512 | MDR-TB | lineage4.6.2.2 | None |
SRR29093294 | MDR-TB | lineage2.2.1 | None |
SRR29274113 | MDR-TB | lineage4.4.1.1 | None |
SRR29056303 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4872232 | MDR-TB | lineage4.6.2.2 | None |
SRR29093501 | MDR-TB | lineage2.2.1 | None |
ERR4011063 | Pre-XDR-TB | lineage2.2.1 | None |
SRR24710023 | MDR-TB | lineage2.2.1 | None |
ERR4423782 | MDR-TB | lineage4.6.2.2 | None |
SRR29093656 | Pre-XDR-TB | lineage2.2.1 | None |
SRR16156799 | Pre-XDR-TB | lineage2.2.1 | None |
ERR9807039 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29093696 | Pre-XDR-TB | lineage2.2.1 | None |
ERR10112836 | Pre-XDR-TB | lineage2.2.1 | None |
SRR10525336 | MDR-TB | lineage4.4.1.1 | None |
SRR11662425 | MDR-TB | lineage1.1.1 | None |
SRR29093537 | MDR-TB | lineage2.2.1 | None |
SRR16156733 | Pre-XDR-TB | lineage2.2.1 | None |
ERR8025455 | Pre-XDR-TB | lineage2.2.1 | None |
ERR1034637 | Pre-XDR-TB | lineage2.2.1 | None |
ERR1873447 | Pre-XDR-TB | lineage2.2.1 | za |
SRR28393333 | MDR-TB | lineage4.3.3 | None |
SRR29096511 | Pre-XDR-TB | lineage2.2.1 | None |
SRR24256062 | Pre-XDR-TB | lineage4.3.3 | None |
SRR29093846 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29093765 | XDR-TB | lineage2.2.1 | None |
SRR29539747 | MDR-TB | lineage2.2.1 | None |
SRR29096827 | MDR-TB | lineage2.2.1 | None |
SRR29094012 | MDR-TB | lineage2.2.1.1 | None |
SRR29539140 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29273693 | MDR-TB | lineage4.4.1.1 | None |
SRR29096479 | MDR-TB | lineage2.2.1 | None |
SRR29017590 | Pre-XDR-TB | lineage1.1.3.1 | None |
SRR29127023 | HR-TB | lineage4.3.4.1 | None |
ERR13284976 | MDR-TB | lineage1.1.1.1 | None |
SRR29094019 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29096372 | MDR-TB | lineage2.2.1 | None |
SRR29096858 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29772773 | Pre-XDR-TB | lineage3.1.2 | None |
SRR29093562 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29096629 | MDR-TB | lineage2.2.1 | None |
SRR29093263 | MDR-TB | lineage2.2.1 | None |
SRR29096351 | Pre-XDR-TB | lineage2.2.1 | None |
SRR11972430 | MDR-TB | lineage2.2.1 | None |
SRR29772611 | MDR-TB | lineage3.1.2 | None |
SRR6832675 | MDR-TB | lineage2.2.1 | None |
ERR1873509 | Pre-XDR-TB | lineage2.2.1 | za |
ERR8025626 | Pre-XDR-TB | lineage2.2.1 | None |
ERR13284266 | MDR-TB | lineage2.2.1 | None |
ERR2307598 | MDR-TB | lineage2.2.1 | None |
ERR4872099 | MDR-TB | lineage4.6.2.2 | None |
SRR29094075 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29096352 | MDR-TB | lineage2.2.1 | None |
ERR4830975 | Pre-XDR-TB | lineage2.2.1 | np |
ERR5866450 | Pre-XDR-TB | lineage2.2.1 | None |
ERR8774569 | Pre-XDR-TB | lineage2.2.1 | None |
SRR28923835 | MDR-TB | lineage2.2.1 | None |
SRR28646117 | MDR-TB | lineage4.4.1.1 | None |
SRR6824651 | Pre-XDR-TB | lineage2.2.1.1 | cn |
SRR28706429 | MDR-TB | lineage2.2.1 | None |
SRR28706449 | HR-TB | lineage2.2.1 | None |
SRR27069418 | MDR-TB | lineage2.2.1.1 | None |
ERR7911539 | Pre-XDR-TB | lineage2.2.1 | za |
ERR7911652 | MDR-TB | lineage2.2.1 | za |
ERR1023465 | Pre-XDR-TB | lineage2.2.1 | None |
ERR2307632 | HR-TB | lineage2.2.1 | None |
SRR7516441 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4553559 | MDR-TB | None | |
SRR28706542 | MDR-TB | lineage2.2.1 | None |
SRR29096952 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29539220 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29094002 | Pre-XDR-TB | lineage2.2.1 | None |
SRR15014767 | MDR-TB | lineage3.1.2 | None |
SRR15014648 | MDR-TB | lineage3.1.2 | None |
ERR1873560 | Pre-XDR-TB | lineage2.2.1 | None |
ERR11043525 | MDR-TB | lineage4.4.1.1 | None |
ERR5865692 | MDR-TB | lineage2.2.1 | None |
ERR4827974 | Pre-XDR-TB | lineage2.2.1 | None |
SRR10869280 | Pre-XDR-TB | lineage2.2.1 | None |
ERR2307625 | HR-TB | lineage2.2.1 | None |
ERR551925 | MDR-TB | lineage4.3.3 | None |
ERR11082540 | MDR-TB | lineage1.1.1.1 | None |
SRR15722998 | Pre-XDR-TB | lineage4.2.2 | None |
ERR1034638 | Pre-XDR-TB | lineage2.2.1 | None |
ERR1873432 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29093563 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29093666 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29096668 | MDR-TB | lineage2.2.1 | None |
SRR29094011 | Pre-XDR-TB | lineage2.2.1 | None |
ERR13284584 | MDR-TB | lineage2.2.1 | None |
ERR133955 | HR-TB | lineage2.2.1 | ru |
SRR16156802 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29093283 | Pre-XDR-TB | lineage2.2.1;lineage4.3.2.1 | None |
SRR29097095 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29096417 | Pre-XDR-TB | lineage2.2.1 | None |
SRR14801788 | MDR-TB | lineage2.2.1 | None |
SRR29772772 | Pre-XDR-TB | lineage3.1.2 | None |
SRR29096799 | MDR-TB | lineage2.2.1 | None |
ERR4011065 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29093635 | Pre-XDR-TB | lineage2.2.1 | None |
SRR15014690 | MDR-TB | lineage3.1.2 | None |
ERR4800011 | MDR-TB | lineage3 | in |
ERR133913 | HR-TB | lineage2.2.1 | ru |
SRR29093617 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29096856 | MDR-TB | lineage2.2.1 | None |
SRR29093891 | MDR-TB | lineage2.2.1 | None |
ERR5865691 | MDR-TB | lineage2.2.1 | None |
DRR130164 | Pre-XDR-TB | lineage2.2.1 | None |
SRR13232703 | Pre-XDR-TB | lineage2.2.1 | None |
SRR16156798 | Pre-XDR-TB | lineage2.2.1 | None |
SRR15014610 | MDR-TB | lineage3.1.2 | None |
SRR29096302 | Pre-XDR-TB | lineage2.2.1 | None |
SRR26399529 | MDR-TB | lineage1.1.1.1 | None |
SRR10869232 | Pre-XDR-TB | lineage2.2.1 | None |
ERR9119446 | MDR-TB | lineage1.1.1.1 | None |
SRR29093506 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29093354 | MDR-TB | lineage2.2.1 | None |
ERR4011075 | Pre-XDR-TB | lineage2.2.1 | None |
ERR551926_ERR551925 | MDR-TB | lineage4.3.3 | None |
SRR29681312 | MDR-TB | lineage2.2.1 | None |
SRR29094068 | MDR-TB | lineage2.2.1 | None |
SRR8758881 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29093655 | MDR-TB | lineage2.2.1 | None |
SRR29094081 | MDR-TB | lineage2.2.1 | None |
SRR29096499 | MDR-TB | lineage2.2.1;lineage4.2.2.2 | None |
SRR29914421 | MDR-TB | lineage2.2.1.1 | None |
SRR29093699 | Pre-XDR-TB | lineage2.2.1 | None |
ERR1034664 | MDR-TB | lineage4.2.2.1 | bg |
SRR29093489 | MDR-TB | lineage2.2.1 | None |
SRR29093763 | Pre-XDR-TB | lineage2.2.1 | None |
ERR8025608 | Pre-XDR-TB | lineage2.2.1 | None |
SRR16156777 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29093276 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29273822 | MDR-TB | lineage4.4.1.1 | None |
ERR10748114 | Pre-XDR-TB | lineage2.2.1;lineage4.8.1 | None |
SRR29096489 | MDR-TB | lineage2.2.1 | None |
ERR1034644 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29539226 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29096839 | Pre-XDR-TB | lineage2.2.1 | None |
SRR10397168 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29093840 | MDR-TB | lineage2.2.1 | None |
ERR4829024 | HR-TB | lineage4.3.4.1 | None |
ERR4831535 | XDR-TB | lineage2.2.1 | None |
SRR29096596 | MDR-TB | lineage2.2.1 | None |
SRR29096484 | Pre-XDR-TB | lineage2.2.1 | None |
ERR13194049 | MDR-TB | lineage2.2.2 | None |
ERR7911526 | Pre-XDR-TB | lineage2.2.1 | za |
ERR7911142 | MDR-TB | lineage1.1.1.1 | vn |
ERR7911547 | Pre-XDR-TB | lineage2.2.1;lineage2.2.2 | za |
ERR7911611 | XDR-TB | lineage2.2.1 | za |
ERR7911619 | Pre-XDR-TB | lineage2.2.1 | za |
ERR8025609 | Pre-XDR-TB | lineage2.2.1 | None |
ERR11773761 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4813576 | RR-TB | lineage4.3.3 | None |
ERR5758371 | Pre-XDR-TB | lineage2.2.1 | None |
ERR9119830 | MDR-TB | lineage2.2.1 | None |
SRR10869258 | Pre-XDR-TB | lineage2.2.1 | None |
SRR1723701 | Pre-XDR-TB | lineage2.2.1.1 | cn |
SRR29093596 | MDR-TB | lineage2.2.1 | None |
SRR29096347 | MDR-TB | lineage2.2.1 | None |
SRR29096597 | MDR-TB | lineage2.2.1 | None |
SRR29096321 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29096947 | MDR-TB | lineage2.2.1 | None |
ERR4011057 | Pre-XDR-TB | lineage2.2.1 | None |
ERR3639733 | MDR-TB | lineage4.4.1.1 | None |
ERR4011086 | Pre-XDR-TB | lineage2.2.1 | None |
SRR6831819 | MDR-TB | lineage2.2.1 | None |
SRR11972254 | MDR-TB | lineage2.2.1 | None |
SRR6511641 | MDR-TB | lineage2.2.1 | None |
SRR7585399 | Pre-XDR-TB | lineage2.2.1 | in |
ERR4797415 | Pre-XDR-TB | lineage1.1.2 | in |
SRR29093757 | MDR-TB | lineage2.2.1 | None |
SRR29093576 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29681420 | MDR-TB | lineage2.2.1 | None |
SRR29126666 | HR-TB | lineage4.3.4.1 | None |
ERR13284128 | MDR-TB | lineage4.4.1.1 | None |
SRR29094090 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4831536 | XDR-TB | lineage2.2.1 | None |
SRR11972250 | Pre-XDR-TB | lineage2.2.1.1 | None |
SRR29093825 | MDR-TB | lineage2.2.1 | None |
ERR11081128 | MDR-TB | lineage4.3.3 | None |
SRR29093540 | MDR-TB | lineage2.2.1 | None |
ERR10112888 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29539758 | Pre-XDR-TB | lineage2.2.1 | None |
SRR16370484 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29093606 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29096377 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4872133 | MDR-TB | lineage4.6.2.2 | None |
SRR29096612 | MDR-TB | lineage2.2.1 | None |
SRR29093568 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29093884 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29096216 | MDR-TB | lineage2.2.1 | None |
ERR4872172 | MDR-TB | lineage4.6.2.2 | None |
SRR6832240 | MDR-TB | lineage2.2.1 | None |
SRR29096616 | MDR-TB | lineage2.2.1 | None |
SRR29017156 | MDR-TB | lineage3 | None |
SRR29093335 | MDR-TB | lineage2.2.1 | None |
SRR16088408 | Pre-XDR-TB | lineage2.2.1 | None |
ERR2515371 | Pre-XDR-TB | lineage2.2.1 | za |
ERR4011061 | Pre-XDR-TB | lineage2.2.1 | None |
ERR13284228 | MDR-TB | lineage4.3.3 | None |
SRR29096855 | Pre-XDR-TB | lineage2.2.1 | None |
ERR2515937 | MDR-TB | lineage4.1.2.1 | za |
ERR9992618 | Pre-XDR-TB | lineage2.2.1 | None |
ERR13191074 | MDR-TB | lineage2.2.2 | None |
ERR9806878 | MDR-TB | lineage2.2.1 | None |
SRR29096349 | MDR-TB | lineage2.2.1 | None |
SRR29274142 | MDR-TB | lineage4.4.1.1 | None |
SRR15014775 | MDR-TB | lineage3.1.2 | None |
SRR29093259 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29772764 | MDR-TB | lineage3.1.2 | None |
SRR16087946 | MDR-TB | lineage4.3.3 | None |
SRR29093854 | MDR-TB | lineage2.2.1 | None |
SRR29093618 | Pre-XDR-TB | lineage2.2.1 | None |
SRR11972290 | MDR-TB | lineage2.2.1 | None |
SRR29093832 | MDR-TB | lineage2.2.1 | None |
ERR2864244 | MDR-TB | lineage2.2.1 | pt |
SRR28351553 | MDR-TB | lineage1.1.2 | None |
ERR5866449 | Pre-XDR-TB | lineage2.2.1 | None |
SRR21747012 | MDR-TB | lineage2.2.1 | None |
SRR6257056 | MDR-TB | lineage2.2.1 | None |
SRR11972193 | Sensitive | lineage2.2.1 | None |
SAMEA2534294 | MDR-TB | lineage4.3.3 | uz |
ERR1193863 | MDR-TB | lineage4.3.3 | uz |
ERR983228 | MDR-TB | lineage2.2.1 | None |
SRR18715177 | Pre-XDR-TB | lineage2.2.1 | None |
ERR13290788 | Pre-XDR-TB | lineage4.5 | None |
SRR6930885 | MDR-TB | lineage2.2.1 | None |
SRR15014680 | MDR-TB | lineage3.1.2 | None |
ERR2516589 | MDR-TB | lineage4.3.2 | pe |
SRR11972312 | HR-TB | lineage2.2.1 | None |
SRR21576725 | MDR-TB | lineage2.2.1 | None |
ERR4800385 | MDR-TB | lineage1.1.2 | None |
ERR9119626 | MDR-TB | lineage4.6.2.2 | None |
ERR9119505 | MDR-TB | lineage4.6.2.2 | None |
SRR15014702 | MDR-TB | lineage3.1.2 | None |
ERR1873562 | Pre-XDR-TB | lineage2.2.1 | za |
ERR4011058 | MDR-TB | lineage2.2.1 | None |
ERR5865954 | Pre-XDR-TB | lineage2.2.1 | None |
ERR9992676 | Pre-XDR-TB | lineage2.2.1 | None |
ERR9119539 | MDR-TB | lineage4.6.2.2 | None |
ERR1034880 | MDR-TB | lineage2.2.1 | pt |
ERR9993142 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29096816 | Pre-XDR-TB | lineage2.2.1 | None |
SRR25827509 | MDR-TB | lineage2.2.1;lineage3;lineage4.3.2 | None |
ERR9119570 | MDR-TB | lineage4.6.2.2 | None |