SRR8847011
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29772765
|
HR-TB
|
lineage1.1.2
|
None
|
SRR29017171
|
Pre-XDR-TB
|
lineage1.1.3.1
|
None
|
ERR11082614
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR13194665
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4797738
|
Pre-XDR-TB
|
lineage4.3.3
|
in
|
SRR29289209
|
MDR-TB
|
lineage3
|
None
|
SRR6831811
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488746
|
Pre-XDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR11488468
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4799095
|
MDR-TB
|
lineage1.2.2.2
|
in
|
ERR11488917
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR11488569
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR7516343
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6797860
|
MDR-TB
|
lineage3
|
None
|
SRR21277250
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3287435
|
Pre-XDR-TB
|
lineage2.2.1
|
pe
|
SRR7341699
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
ERR5864961
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510311
|
MDR-TB
|
lineage3
|
pk
|
ERR6865843
|
Other
|
lineage4.3.3
|
None
|
ERR5865889
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827824
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9028491
|
XDR-TB
|
lineage3
|
None
|
ERR7911335
|
MDR-TB
|
lineage2.2.1
|
us
|
ERR7975637
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR29016813
|
MDR-TB
|
lineage4.8
|
None
|
SRR1144726
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR10040305
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10040379
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865270
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21276915
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3287713
|
MDR-TB
|
lineage2.2.1
|
pe
|
ERR3335750
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR3335759
|
MDR-TB
|
lineage3
|
pk
|
ERR4800452
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR3335725
|
RR-TB
|
lineage3
|
pk
|
ERR2020084
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800624
|
Pre-XDR-TB
|
lineage3.1.2.1
|
None
|
SRR9028484
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR29017422
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR987746
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12420372
|
MDR-TB
|
lineage2.2.2
|
None
|
SAMN02599131
|
MDR-TB
|
lineage3
|
None
|
ERR11488370
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR4553872
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1167377
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR4829937
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR5863885
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5863897
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5897099
|
XDR-TB
|
lineage3
|
None
|
SRR12420521
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1003100
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16370258
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8774533
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR29539230
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800205
|
Pre-XDR-TB
|
lineage4.3.3
|
in
|
SRR5709938
|
Pre-XDR-TB
|
lineage4.3.4.2
|
th
|
ERR11488562
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR1144787
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR671727
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR29772458
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
SRR6824291
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR3794359
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR2024904
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR29289361
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR29055932
|
MDR-TB
|
lineage1.2.2.1
|
None
|
ERR7737878
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265009
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR987756
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488706
|
Pre-XDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR2516572
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pe
|
SRR1048838
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1146314
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR3509858
|
MDR-TB
|
lineage2.2.1;lineage4.3.4.2.1
|
None
|
ERR11082342
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR4553853
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4829729
|
Pre-XDR-TB
|
lineage4.7
|
it
|
SRR21674638
|
MDR-TB
|
lineage4.1.4
|
None
|
ERR4423772
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR10040453
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR5865354
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3077998
|
MDR-TB
|
lineage3.1.1;lineage4.2.2.2
|
None
|
SRR25827747
|
XDR-TB
|
lineage2.2.1;lineage3.1.2
|
None
|
ERR4799277
|
Pre-XDR-TB
|
lineage4.8
|
in
|
SRR3105741
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR4830672
|
MDR-TB
|
lineage4.3.1
|
dz
|
ERR4553851
|
MDR-TB
|
lineage4.8
|
None
|
ERR4830734
|
MDR-TB
|
lineage4.3.1
|
dz
|
ERR11488538
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR7592354
|
HR-TB
|
lineage4.8
|
None
|
SRR29914414
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR234605
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR10040510
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10225472
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR9993134
|
MDR-TB
|
lineage3
|
None
|
SRR18054772
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827563
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798750
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR718534
|
HR-TB
|
lineage1.2.1.2.1
|
th
|
SRR1165636
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR11972374
|
MDR-TB
|
lineage1.2.2.1
|
None
|
SRR1723730
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR17163492
|
MDR-TB
|
lineage3.1.1
|
None
|
ERR5864719
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796863
|
Pre-XDR-TB
|
lineage3.1.2
|
in
|
ERR4797100
|
MDR-TB
|
lineage1.1.2;lineage3
|
in
|
ERR11488373
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR4553706
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR29017116
|
HR-TB
|
lineage1.1.3.1
|
None
|
ERR4811313
|
MDR-TB
|
lineage4.2.2
|
cn
|
SRR671824
|
Pre-XDR-TB
|
lineage2.2.2
|
cn
|
SRR29017642
|
MDR-TB
|
lineage1.1.3.1
|
None
|
ERR5864717
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4829697
|
Pre-XDR-TB
|
lineage4
|
None
|
SRR29539525
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4553868
|
MDR-TB
|
lineage2.2
|
None
|
ERR5863886
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5863891
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119516
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR4800079
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR22424767
|
MDR-TB
|
lineage3
|
None
|
ERR2515436
|
RR-TB
|
lineage2.2.1
|
None
|
ERR5864962
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4553703
|
MDR-TB
|
lineage4.8
|
None
|
SRR24256336
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16088502
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1166817
|
MDR-TB
|
lineage3.1
|
None
|
SAMEA2533547
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR5864718
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488523
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR7911432
|
MDR-TB
|
lineage4.8.1
|
za
|
ERR11488773
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR25827782
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR12420449
|
MDR-TB
|
lineage4.5
|
None
|
ERR4423771
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR11049814
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25515509
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4553806
|
MDR-TB
|
lineage4.8
|
None
|
ERR11049418
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516871
|
Pre-XDR-TB
|
lineage3
|
gb
|
ERR11488400
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR4423787
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR12420444
|
RR-TB
|
lineage2.2.1
|
None
|
ERR751558
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
ERR7975635
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR5864996
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18665471
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1168971
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR069933
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR29289230
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR29289401
|
XDR-TB
|
lineage3
|
None
|
ERR4800544
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR1013537
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3335776
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR3335747
|
Pre-XDR-TB
|
lineage4
|
pk
|
ERR3287661
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4553562
|
HR-TB
|
lineage1.1.3.1
|
None
|
SRR6964507
|
MDR-TB
|
lineage3
|
None
|
ERR5863893
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5863895
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18500590
|
Other
|
lineage2.2.1
|
None
|
DRR130216
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
ERR8774496
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR5863896
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488856
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR23938589
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29017391
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR15723024
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4553751
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR29539777
|
MDR-TB
|
lineage4.7
|
None
|
ERR13260060
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR108453
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR4553711
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR11638839
|
XDR-TB
|
lineage3
|
None
|
ERR4796452
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR2510834
|
MDR-TB
|
lineage2.2.1
|
it
|
ERR4872181
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR11342663
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1048835
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR751546
|
MDR-TB
|
lineage2.2.1
|
pe
|
SRR067513
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR21277574
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162819
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR5864992
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6079924
|
MDR-TB
|
lineage2.2.1.1
|
au
|
SRR833217
|
Pre-XDR-TB
|
lineage4.2.2
|
None
|
SRR11662665
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR752114
|
RR-TB
|
lineage1.1.1
|
th
|
ERR5864959
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR751486
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
ERR9907741
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR3273196
|
MDR-TB
|
lineage2.2.1.2
|
None
|
SRR12420275
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4813059
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2510199
|
MDR-TB
|
lineage2.2.1
|
pe
|
SRR6824377
|
MDR-TB
|
lineage2.2.1.1
|
cn
|
SRR671831
|
MDR-TB
|
lineage4.4.2
|
cn
|
ERR4797221
|
Pre-XDR-TB
|
lineage4.8
|
in
|
SRR1169242
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR13244332
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26937123
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1710076
|
Pre-XDR-TB
|
lineage2.2.2
|
cn
|
ERR7975679
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR5863898
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8758892
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR11488474
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR11488544
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR2510478
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR11488684
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR28393388
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR10040315
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11033732
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6358867
|
MDR-TB
|
lineage4.6.1.1
|
None
|
SRR12062497
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20969752
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800413
|
MDR-TB
|
lineage3
|
in
|
ERR11043651
|
MDR-TB
|
lineage4.8
|
None
|
SRR6797751
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10877896
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25515748
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR2024972
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR2024996
|
XDR-TB
|
lineage2.2.1
|
cn
|
ERR229936
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR11488500
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR5864995
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6257026
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR4423153
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2516549
|
Pre-XDR-TB
|
lineage3
|
nl
|
SRR6797538
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1003102
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR12328165
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22250108
|
MDR-TB
|
lineage4.8
|
None
|
ERR7737664
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4553877
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR21576686
|
MDR-TB
|
lineage4.5
|
None
|
SRR5153271
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02360622
|
Pre-XDR-TB
|
lineage2.2.1
|
kr
|
SAMN02360621
|
Pre-XDR-TB
|
lineage2.2.1
|
kr
|
ERR4831603
|
Pre-XDR-TB
|
lineage2.2.1.1
|
vn
|
SRR1166815
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR18715330
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800074
|
MDR-TB
|
lineage1.2.2.2
|
in
|
ERR5897097
|
MDR-TB
|
lineage3;lineage4.6.2.1
|
None
|
ERR4797937
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR4797963
|
MDR-TB
|
lineage3
|
in
|
SRR3743386
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR067586
|
HR-TB
|
lineage2.2.1
|
ru
|
SRR25207058
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830932
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR067525
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4827575
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22249805
|
MDR-TB
|
lineage3
|
None
|
SRR15014682
|
MDR-TB
|
lineage4.8
|
None
|
ERR11049098
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4553912
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153234
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2653162
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR5266559
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR067482
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR069949
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR987760
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR038746
|
MDR-TB
|
lineage2.2.1
|
ug
|
ERR4797133
|
MDR-TB
|
lineage1.1.2
|
in
|
ERR5863888
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7592326
|
HR-TB
|
lineage4.8
|
None
|
ERR4797993
|
HR-TB
|
lineage1.2.2.2
|
in
|
SRR21887698
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4553600
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR4813849
|
Pre-XDR-TB
|
lineage4.7
|
None
|
ERR11082908
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1180335
|
HR-TB
|
lineage1.1.2
|
None
|
SRR10040393
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02414990
|
MDR-TB
|
lineage3.1
|
se
|
SAMN02403579
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
ERR4553881
|
MDR-TB
|
lineage1.1.3.1
|
None
|
SRR1173367
|
MDR-TB
|
lineage3
|
None
|
ERR5863894
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3085356
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR4423139
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR25827499
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR15014658
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1013539
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864720
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488383
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR11080938
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4798747
|
MDR-TB
|
lineage4.8
|
in
|
SRR16088481
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866018
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488994
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR400431
|
Other
|
lineage1.2.1.1
|
gb
|
ERR7737822
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4797246
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR9029857
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR5863884
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290737
|
MDR-TB
|
lineage4.5
|
None
|
ERR11081363
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265787
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28044942
|
HR-TB
|
lineage3
|
None
|
ERR4829129
|
HR-TB
|
lineage3.1
|
None
|
ERR11043295
|
MDR-TB
|
lineage3
|
None
|
SRR29017053
|
MDR-TB
|
lineage4.5
|
None
|
SRR1172861
|
MDR-TB
|
lineage3
|
None
|
ERR13266820
|
XDR-TB
|
lineage3
|
None
|
SRR10040467
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4024698
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488426
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488450
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR2516578
|
Pre-XDR-TB
|
lineage2.2.1
|
pe
|
SRR29273715
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR2516024
|
MDR-TB
|
lineage2.2.1
|
za
|
SRR20969359
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799849
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.8
|
in
|
SRR10040171
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872180
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR11775619
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR6930923
|
Pre-XDR-TB
|
lineage1.2.2.2
|
None
|
SRR25207237
|
Pre-XDR-TB
|
lineage4.2.2
|
None
|
ERR7737938
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25207041
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865268
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8651616
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488882
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR10040312
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290576
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR2024957
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR4800178
|
HR-TB
|
lineage1.1.2
|
None
|
ERR5864960
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10397125
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265899
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR12117989
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR11662296
|
MDR-TB
|
lineage2.1
|
None
|
ERR10680170
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12142356
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772413
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488768
|
Pre-XDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR25827552
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR12420280
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351537
|
Pre-XDR-TB
|
lineage4.1.1.2
|
None
|
ERR4813068
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR14088372
|
HR-TB
|
lineage3.1
|
None
|
SRR1144795
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR2510883
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR4553946
|
XDR-TB
|
lineage2.2.1
|
None
|
SAMN02414892
|
MDR-TB
|
lineage4.3.4.1
|
se
|
ERR4797844
|
Pre-XDR-TB
|
lineage3.1.2
|
in
|
ERR11488553
|
Pre-XDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR3082099
|
MDR-TB
|
lineage4.8
|
None
|
SRR15014776
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR5918113
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR7361994
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488443
|
MDR-TB
|
lineage4.3.2;lineage4.3.4.2.1
|
None
|
ERR11082301
|
HR-TB
|
lineage4.2.2.1
|
None
|
SRR23310866
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR2024964
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR21031688
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1723695
|
HR-TB
|
lineage2.2.1.1
|
None
|
SRR28240014
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5863887
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR070011
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR11069061
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
ERR13284963
|
MDR-TB
|
lineage4.8
|
None
|
ERR4553952
|
RR-TB
|
lineage1.1.3.1
|
None
|
ERR4553918
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7737876
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR7645873
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR5864989
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29289134
|
MDR-TB
|
lineage3
|
None
|
ERR2307555
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21887697
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488837
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SAMN02599035
|
HR-TB
|
lineage1.1.2
|
in
|
ERR4799961
|
XDR-TB
|
lineage4.8
|
in
|
ERR3287587
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488411
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR4797074
|
Pre-XDR-TB
|
lineage4.8
|
in
|
SRR25206924
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR12420431
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4811355
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR751603
|
Pre-XDR-TB
|
lineage2.2.1
|
pe
|
SRR28339292
|
Pre-XDR-TB
|
lineage4.9
|
None
|
SRR1167352
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR11773766
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29273728
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR11348215
|
HR-TB
|
lineage1.1.2
|
None
|
SRR28045257
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
SRR10828207
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR4799075
|
MDR-TB
|
lineage1.2.2.2
|
in
|
SRR1162876
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR4813038
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
SAMEA5569854
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR1175105
|
MDR-TB
|
lineage3
|
None
|
ERR4799563
|
Pre-XDR-TB
|
lineage1.1.2
|
in
|
ERR4553420
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR1165658
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR6964625
|
MDR-TB
|
lineage3
|
None
|
SRR7655979
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24466786
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR18002957
|
HR-TB
|
lineage2.2.1
|
None
|
SRR28394281
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1465929
|
MDR-TB
|
lineage4.8
|
do
|
ERR4798704
|
MDR-TB
|
lineage3
|
in
|
ERR4799202
|
Pre-XDR-TB
|
lineage4.8
|
in
|
ERR4800157
|
MDR-TB
|
lineage3.1.2.1
|
None
|
SRR1048869
|
HR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
SRR29538991
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4829593
|
Pre-XDR-TB
|
lineage3.1.2.1
|
it
|
SRR6257003
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865353
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796594
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR10680048
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR6824687
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR2864274
|
MDR-TB
|
lineage4.7
|
pt
|
ERR1035155
|
MDR-TB
|
lineage4.2.2.2
|
sa
|
SRR15316499
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7653612
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4828221
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4812872
|
Pre-XDR-TB
|
lineage4.3.2
|
None
|
ERR550895
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1013570
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799691
|
MDR-TB
|
lineage3
|
in
|
ERR7737657
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR18054804
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1167069
|
MDR-TB
|
lineage3.1
|
None
|
SRR1166936
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR3132093
|
MDR-TB
|
lineage4
|
None
|
ERR4829954
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
ERR11488512
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR5152908
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02414897
|
MDR-TB
|
lineage4.3.4.1
|
se
|
SRR1162758
|
MDR-TB
|
lineage3.1
|
None
|
SRR1013569
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12708405
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1048839
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12420390
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9030456
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR551249_ERR551247_ERR551248
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4553870
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153609
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550895_ERR550894
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488496
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR067532
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR29017431
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR5709906
|
MDR-TB
|
lineage2.2.2
|
th
|
SAMN02599130
|
MDR-TB
|
lineage3
|
None
|
ERR4553414
|
HR-TB
|
lineage1.1.3.1
|
None
|
ERR7975647
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR9992683
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR10341357
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
SRR12420418
|
RR-TB
|
lineage2.2.1
|
None
|
ERR11775071
|
MDR-TB
|
lineage1.2.2.1
|
None
|
ERR5864993
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29017646
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29017412
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR11081514
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088584
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR29539360
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15368955
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4553659
|
MDR-TB
|
lineage2.2
|
None
|
SRR15723011
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR25827871
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR7911163
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR5865267
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10040466
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4819109
|
Pre-XDR-TB
|
lineage4
|
gb
|
ERR11488469
|
XDR-TB
|
lineage4.8.1
|
None
|
ERR11488772
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR4553919
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798756
|
Pre-XDR-TB
|
lineage4.8
|
in
|
ERR4799474
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
in
|
ERR4553740
|
MDR-TB
|
lineage1.1.3.3
|
None
|
ERR4798296
|
Pre-XDR-TB
|
lineage4.8
|
in
|
ERR13290903
|
MDR-TB
|
lineage2.1
|
None
|
ERR11489063
|
Pre-XDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR2024959
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4798531
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR7517738
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488737
|
Pre-XDR-TB
|
lineage4.3.4.2.1
|
None
|
SAMN03246429
|
MDR-TB
|
lineage2.2.1.1
|
cn
|
ERR4830732
|
MDR-TB
|
lineage4.3.1
|
dz
|
ERR550894
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1036287
|
MDR-TB
|
lineage2.2.1
|
pt
|
ERR4799472
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR5152921
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4811353
|
Pre-XDR-TB
|
lineage4.4.2
|
cn
|
ERR11081950
|
MDR-TB
|
lineage4.8
|
None
|
SRR29772727
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SAMN02360564
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23310948
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR28045536
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR11082120
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21277856
|
MDR-TB
|
lineage4.5
|
None
|
SRR28044611
|
MDR-TB
|
lineage3.1.2.1
|
None
|
ERR6358710
|
MDR-TB
|
lineage4.6.1.1
|
None
|
ERR11488449
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR671850
|
MDR-TB
|
lineage4.5
|
cn
|
ERR13290669
|
MDR-TB
|
lineage3.1
|
None
|
ERR4799502
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR13265938
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5486873
|
MDR-TB
|
lineage4.8
|
None
|
ERR400413
|
Other
|
lineage3
|
gb
|
ERR4872110
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR11488635
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR4829857
|
MDR-TB
|
lineage2.2.1
|
it
|
ERR2517081
|
MDR-TB
|
lineage3
|
gb
|
ERR5864988
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864994
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7975632
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4799668
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR4800094
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
SAMN02360549
|
Pre-XDR-TB
|
lineage2.2.1
|
kr
|
ERR4830722
|
Pre-XDR-TB
|
lineage4.3.1
|
dz
|
ERR4798336
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage3
|
in
|
ERR11082881
|
MDR-TB
|
lineage4.5
|
None
|
SRR1162850
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR6964505
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR12420439
|
Other
|
lineage2.2.1
|
None
|
ERR11488845
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR3085249
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR11488340
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR4553488
|
HR-TB
|
lineage4.8
|
None
|
ERR2515590
|
Pre-XDR-TB
|
lineage4.1.2
|
za
|
SRR15723125
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7902619
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR5864724
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29017289
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4553415
|
MDR-TB
|
lineage4
|
None
|
ERR4553441
|
MDR-TB
|
lineage4.8
|
None
|
ERR4799353
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR4553860
|
MDR-TB
|
lineage4.8
|
None
|
ERR4830542
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR7341681
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR11972347
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR069945
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351273
|
MDR-TB
|
lineage4.6
|
None
|
SRR27069414
|
MDR-TB
|
lineage4.5
|
None
|
ERR4553445
|
MDR-TB
|
|
None
|
SRR28045251
|
Pre-XDR-TB
|
lineage3.1.2.1
|
None
|
SRR28045250
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11252494
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR28351472
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28046041
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393995
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2510243
|
MDR-TB
|
lineage3.1.2
|
pk
|
ERR3335777
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR3335792
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR3335799
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR5897077
|
XDR-TB
|
lineage3
|
None
|
ERR5897084
|
Pre-XDR-TB
|
lineage3;lineage4.9
|
None
|
ERR4799965
|
Pre-XDR-TB
|
lineage3.1
|
in
|
ERR13290372
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR13290577
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR29539817
|
MDR-TB
|
lineage4.7
|
None
|
SRR29681315
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29681330
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772511
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR9030256
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR29539523
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR30182833
|
MDR-TB
|
lineage1.2.1.2
|
None
|
ERR11488709
|
Pre-XDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR2851365
|
MDR-TB
|
lineage3
|
lb
|
ERR3273204
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8774494
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR8975795
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1180470
|
HR-TB
|
lineage1.1.2
|
None
|
SRR25534333
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488731
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11465560
|
MDR-TB
|
lineage1.1.2
|
None
|
DRR130148
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
ERR4829053
|
RR-TB
|
lineage4.6.2.2
|
None
|
SRR1172068
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR6797773
|
Pre-XDR-TB
|
lineage1.2.2.2
|
None
|
ERR11488698
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR25207307
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3639699
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4829761
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR7911410
|
MDR-TB
|
lineage2.2.1
|
us
|
SRR1165373
|
MDR-TB
|
lineage3.1
|
None
|
SRR6964567
|
MDR-TB
|
lineage3
|
None
|
SRR13068983
|
Other
|
lineage2.2.1;lineage4
|
None
|
SRR18054787
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162834
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR12420331
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488931
|
XDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR11488996
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR5152896
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153262
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864716
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827701
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR13195573
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29772741
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR1193880
|
Pre-XDR-TB
|
lineage4.3.2.1
|
za
|
SRR671721
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR4553730
|
MDR-TB
|
|
None
|
ERR4553752
|
MDR-TB
|
lineage4.5
|
None
|
SRR6930885
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510842
|
MDR-TB
|
lineage4.2.2.1
|
it
|
ERR11488655
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR11488396
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR11043545
|
MDR-TB
|
lineage3.1
|
None
|
SRR25207331
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15014722
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR25827445
|
MDR-TB
|
lineage1.1.2;lineage3
|
None
|
ERR11488515
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR28351431
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
ERR2516890
|
MDR-TB
|
lineage3
|
gb
|
SRR29017700
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093897
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR4796605
|
MDR-TB
|
lineage3.1.2.1
|
in
|
ERR4797510
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1003099
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1003103
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10525349
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR21747016
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10040448
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10380037
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR12796608
|
Pre-XDR-TB
|
lineage3.1.2
|
None
|
ERR11488676
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR11488782
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR25827525
|
Pre-XDR-TB
|
lineage3;lineage4.8
|
None
|
SRR28393819
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266218
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9030387
|
MDR-TB
|
lineage4.9
|
None
|
ERR4553671
|
MDR-TB
|
lineage2.2
|
None
|
SRR25207333
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
ERR4810979
|
Pre-XDR-TB
|
lineage4.2.2
|
cn
|
ERR4811315
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR4813388
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
ERR11488807
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR551247
|
Other
|
lineage2.2.1
|
None
|
ERR11252568
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR6964546
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR29385492
|
HR-TB
|
lineage2.2.1
|
None
|
ERR6359002
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830844
|
MDR-TB
|
lineage3.1.1
|
et
|
ERR9119578
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR4813194
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR1174841
|
HR-TB
|
lineage1.1.2
|
None
|
ERR4178141
|
Other
|
lineage4.3.3
|
None
|
SRR1173105
|
MDR-TB
|
lineage3
|
None
|
ERR10680080
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR11972229
|
HR-TB
|
lineage2.2.1.1
|
None
|
ERR11067638
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9028487
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR15368787
|
MDR-TB
|
lineage4.5
|
None
|
SRR29539215
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29124298
|
Pre-XDR-TB
|
lineage3.1.2.1
|
None
|
ERR7911476
|
MDR-TB
|
lineage2.2.2
|
vn
|
SRR28467051
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1013540
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488691
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR551249
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR688045
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4423744
|
MDR-TB
|
lineage1.1.2
|
None
|
SAMN02414960
|
MDR-TB
|
lineage4.3.4.1
|
se
|
SRR25827365
|
MDR-TB
|
lineage2.2.1;lineage3.1.3
|
None
|
ERR4799442
|
MDR-TB
|
lineage3
|
None
|
ERR13291012
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4553883
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797621
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR18715335
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15465773
|
Pre-XDR-TB
|
lineage3;lineage4.1.1.3
|
None
|
ERR5864722
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5863892
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911123
|
MDR-TB
|
lineage2.2.2
|
vn
|
ERR13290383
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR25827838
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR18054774
|
MDR-TB
|
lineage2.2.1.2
|
None
|
ERR13284596
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR28351445
|
Pre-XDR-TB
|
lineage3.1.2
|
None
|
ERR234629
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR29681233
|
HR-TB
|
lineage2.2.1
|
None
|
SRR6797640
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488643
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR2510485
|
MDR-TB
|
lineage3
|
pk
|
SRR28389841
|
Other
|
lineage4.3.4.1
|
None
|
ERR2516703
|
MDR-TB
|
lineage4.1.1
|
nl
|
ERR3509850
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR13191059
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR11489062
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR4813629
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4797223
|
XDR-TB
|
lineage3.1.2
|
in
|
ERR13290672
|
MDR-TB
|
lineage3.1
|
None
|
SRR069944
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR5863889
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1011519
|
Pre-XDR-TB
|
lineage4.2.2
|
None
|
SRR24256266
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488729
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR28351578
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR22424756
|
MDR-TB
|
lineage3.1.2
|
None
|
SRR28339291
|
Pre-XDR-TB
|
lineage4.9
|
None
|
SRR25206933
|
MDR-TB
|
lineage4.2.2
|
None
|
SRR27069390
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393326
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
SRR27069447
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR27069369
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5863899
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510473
|
MDR-TB
|
lineage3
|
pk
|
ERR553056
|
Other
|
lineage4.7
|
de
|
SRR10315637
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR3639776
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4553911
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772391
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR29772431
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4828953
|
Pre-XDR-TB
|
lineage4
|
None
|
SRR21279414
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR16088333
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827702
|
MDR-TB
|
lineage2.2.1;lineage3.1.2
|
None
|
SRR29051094
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR13267007
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR5864721
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25206931
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510599
|
MDR-TB
|
lineage4.8
|
None
|
ERR2516208
|
MDR-TB
|
lineage4.3.3
|
be
|
ERR2516576
|
MDR-TB
|
lineage4
|
pe
|
ERR2516843
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR5866019
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15316588
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12142407
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351588
|
MDR-TB
|
lineage3
|
None
|
SRR8380862
|
MDR-TB
|
lineage2.2.1.1
|
in
|
ERR13290671
|
MDR-TB
|
lineage3.1
|
None
|
SRR29017667
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR4553930
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4553983
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1034657
|
MDR-TB
|
lineage4.7
|
bg
|
SRR2024883
|
MDR-TB
|
lineage2.2.1.2
|
cn
|
ERR4796491
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR12420462
|
RR-TB
|
lineage2.2.1
|
None
|
ERR3132204
|
RR-TB
|
lineage4.8
|
None
|
SRR15315787
|
MDR-TB
|
lineage4.5
|
None
|
SRR29055722
|
MDR-TB
|
lineage4.1.4
|
None
|
SRR16088543
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR2864282
|
MDR-TB
|
lineage4.7
|
pt
|
ERR4798666
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SAMN02599061
|
MDR-TB
|
lineage3
|
None
|
SRR29017122
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR5865352
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR2025000
|
MDR-TB
|
lineage2.2.1.2
|
cn
|
ERR13291126
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR144635
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR13265216
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827529
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.8
|
None
|
SRR14782338
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR11488620
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR6797537
|
MDR-TB
|
lineage4.9
|
None
|
SRR12420370
|
RR-TB
|
lineage2.2.1
|
None
|
ERR551159
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR11488532
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR26558641
|
MDR-TB
|
lineage4.1.2
|
None
|
ERR11488440
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR6358864
|
MDR-TB
|
lineage4.6.1.1
|
None
|
ERR1193723
|
HR-TB
|
lineage4.3.3
|
mx
|
SRR29017634
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR10305978
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772809
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR671760
|
Pre-XDR-TB
|
lineage4.4.2
|
cn
|
ERR5865269
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13194084
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SAMN02403578
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
za
|
ERR13276405
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
SRR25515663
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1013538
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11033737
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6831724
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9971014
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR12062498
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11043899
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR7975633
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR6824379
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR5863900
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1723441
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR11488452
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR3082121
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911726
|
Pre-XDR-TB
|
lineage2.2.1
|
us
|
ERR4423788
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR4457817
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR3287755
|
MDR-TB
|
lineage2.2.1
|
pe
|
SRR7653084
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864991
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10040166
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082300
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR5864963
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6358850
|
MDR-TB
|
lineage4.7
|
None
|
SRR3085266
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1169490
|
HR-TB
|
lineage1.1.2
|
None
|
ERR5863901
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29056163
|
Pre-XDR-TB
|
lineage4.9
|
None
|
SRR29772721
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
ERR11488334
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR10305999
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR9992666
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR552766
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11081912
|
MDR-TB
|
lineage3.1
|
None
|
ERR13266638
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13290373
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR4797828
|
Pre-XDR-TB
|
lineage4.8
|
in
|
ERR11489028
|
Pre-XDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR4796503
|
XDR-TB
|
lineage3
|
in
|
ERR9119579
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR29017025
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR16370536
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290901
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR28351186
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR20969744
|
Pre-XDR-TB
|
lineage4.2.2
|
None
|
ERR11488866
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR28045040
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351580
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR5864990
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393447
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR28045564
|
Pre-XDR-TB
|
lineage3.1
|
None
|
SRR28044481
|
HR-TB
|
lineage3.1.2.1
|
None
|
ERR2510538
|
Pre-XDR-TB
|
lineage4.2.1
|
pk
|
ERR3335734
|
Pre-XDR-TB
|
lineage4
|
pk
|
SRR8651574
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR8651577
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR8651602
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR13290370
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR29538967
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797587
|
Pre-XDR-TB
|
lineage4.2.2
|
in
|
ERR13262023
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR30182546
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
SRR29538998
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29539113
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290766
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR29539003
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29772564
|
MDR-TB
|
lineage4.8
|
None
|
ERR1034613
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR4797941
|
Pre-XDR-TB
|
lineage3.1.2.1
|
in
|
ERR552204
|
Other
|
lineage4.7
|
de
|
ERR5863890
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864723
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992818
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR1723696
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR18002928
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR4423146
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SAMEA2533805
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMN02360548
|
Pre-XDR-TB
|
lineage2.2.1
|
kr
|
SAMN02398700
|
Pre-XDR-TB
|
lineage2.2.1
|
kr
|
SRR15014710
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510385
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR4799930
|
Pre-XDR-TB
|
lineage1.1.2
|
in
|
ERR4800467
|
Pre-XDR-TB
|
lineage4.8
|
in
|
SRR29017011
|
MDR-TB
|
lineage4.8
|
None
|
SRR29017378
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR10868625
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2516839
|
Pre-XDR-TB
|
lineage3
|
gb
|
ERR4798805
|
Pre-XDR-TB
|
lineage4.8
|
in
|
ERR4828844
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR11488575
|
Pre-XDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR3509862
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR13266897
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR8774534
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR3335789
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR9992655
|
XDR-TB
|
lineage4.8.1
|
None
|
ERR7975685
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR11342662
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR27069427
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28858421
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13264958
|
XDR-TB
|
lineage3
|
None
|
ERR779851
|
MDR-TB
|
lineage2.2.1
|
pe
|
SRR1723619
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR11488776
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR21658750
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|