lineage | Count |
---|---|
lineage4.9 | 4 |
lineage6;lineage5.1;lineage4.2.2;lineage1.1.3.1;lineage1.1.1 | 1 |
lineage4.6.1 | 2 |
lineage4.1.1 | 15 |
lineage3.1.1 | 17 |
lineage3.1.2.2 | 2 |
La1.8.1 | 18 |
lineage4.8.2 | 18 |
lineage3 | 38 |
lineage4.1.1.3.1 | 20 |
lineage4.8.1 | 3 |
lineage4.8 | 9 |
lineage3.1.2 | 6 |
lineage4.6.2.2 | 2 |
lineage4.3.4.2.1 | 11 |
lineage1.1.2 | 12 |
lineage4.6.2.1 | 1 |
lineage4.4.1.1 | 4 |
lineage1.2.2.1 | 4 |
lineage4.1.1.3 | 4 |
lineage4.1.2.1 | 11 |
lineage4.1.4 | 1 |
lineage1.2.2.2 | 2 |
lineage4.3.3 | 7 |
lineage4.4.2 | 3 |
lineage5.1.3 | 1 |
lineage2.2.1 | 10 |
8 | |
lineage4 | 3 |
La1.7.1 | 5 |
lineage7 | 21 |
lineage4.2.2.2 | 3 |
lineage4.6.3 | 3 |
lineage9 | 1 |
lineage2.2.1.1 | 2 |
lineage1.1.1 | 1 |
lineage6.1.1 | 1 |
lineage6 | 2 |
lineage4.5 | 1 |
lineage6.3.1 | 1 |
lineage4.2.1 | 1 |
lineage1.1.3.2 | 3 |
lineage4.3.4.1 | 1 |
lineage4.1.2 | 2 |
lineage1.1.3 | 1 |
lineage2.2.2 | 1 |
lineage1.1.3.1 | 1 |
La1.3 | 1 |
lineage1.1.1.1 | 1 |
spoligotype | Count |
---|---|
None | 290 |
ID | Drug resistance | Lineage | Country iso2 | ERR027457 | HR-TB | lineage4.9 | None | ERR028317 | Sensitive | lineage6;lineage5.1;lineage4.2.2;lineage1.1.3.1;lineage1.1.1 | None | ERR028330 | Sensitive | lineage4.6.1 | None | ERR046731 | Sensitive | lineage4.1.1 | None | ERR046729 | Sensitive | lineage3.1.1 | gb | ERR046740 | Sensitive | lineage4.1.1 | None | ERR046730 | HR-TB | lineage3.1.2.2 | gb | ERR046746 | Sensitive | lineage4.1.1 | gb | ERR046734 | Sensitive | lineage4.1.1 | gb | ERR046739 | Sensitive | lineage4.1.1 | gb | ERR046750 | Other | La1.8.1 | None | ERR046742 | Sensitive | lineage4.1.1 | None | ERR046752 | Sensitive | lineage4.8.2 | gb | ERR046748 | Other | La1.8.1 | gb | ERR046744 | Sensitive | lineage4.1.1 | gb | ERR046747 | Other | La1.8.1 | gb | ERR046758 | Sensitive | lineage4.8.2 | gb | ERR046749 | Other | La1.8.1 | gb | ERR046754 | Sensitive | lineage4.8.2 | gb | ERR046761 | Sensitive | lineage4.8.2 | gb | ERR046751 | Sensitive | lineage4.8.2 | gb | ERR046756 | Sensitive | lineage4.8.2 | gb | ERR046760 | Sensitive | lineage4.8.2 | gb | ERR046759 | Sensitive | lineage4.8.2 | gb | ERR046763 | Sensitive | lineage4.8.2 | gb | ERR046764 | Sensitive | lineage4.8.2 | gb | ERR046765 | Sensitive | lineage4.8.2 | gb | ERR046771 | Sensitive | lineage3.1.1 | gb | ERR046768 | Sensitive | lineage4.8.2 | gb | ERR046773 | Sensitive | lineage3.1.1 | gb | ERR046774 | Other | La1.8.1 | None | ERR046779 | Sensitive | lineage3 | gb | ERR046783 | Sensitive | lineage4.1.1.3.1 | gb | ERR046775 | Sensitive | lineage3.1.1 | gb | ERR046778 | HR-TB | lineage4.8.1 | gb | ERR046784 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046776 | Sensitive | lineage4.8.1 | gb | ERR046789 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046785 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046780 | HR-TB | lineage3 | gb | ERR046792 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046786 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046791 | Sensitive | lineage4.1.1.3.1 | gb | ERR046790 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046793 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046798 | Sensitive | lineage4.1.1.3.1 | gb | ERR046796 | Pre-XDR-TB | lineage4.8 | gb | ERR046799 | Sensitive | lineage4.1.1.3.1 | gb | ERR046810 | Sensitive | lineage3.1.2 | None | ERR046812 | Sensitive | lineage3 | None | ERR046803 | Sensitive | lineage3 | None | ERR046805 | Sensitive | lineage3 | None | ERR046806 | Sensitive | lineage3 | None | ERR046809 | Sensitive | lineage3 | None | ERR046811 | Sensitive | lineage3 | None | ERR046804 | Sensitive | lineage3 | None | ERR046816 | Other | lineage3.1.2 | None | ERR046814 | Sensitive | lineage3 | None | ERR046813 | Sensitive | lineage3 | None | ERR046808 | Sensitive | lineage3 | None | ERR046820 | Sensitive | lineage4.8.2 | gb | ERR046821 | MDR-TB | lineage4.8 | gb | ERR046822 | Sensitive | lineage4.1.1.3.1 | gb | ERR046828 | Sensitive | lineage3 | None | ERR046819 | Sensitive | lineage4.1.1 | gb | ERR046817 | Sensitive | lineage4.9 | None | ERR046826 | Sensitive | lineage3 | None | ERR046825 | RR-TB | lineage4.1.1 | gb | ERR046818 | Sensitive | lineage3.1.2 | None | ERR046834 | HR-TB | lineage4.6.2.2 | gb | ERR046836 | Sensitive | lineage4.3.4.2.1 | gb | ERR046832 | Sensitive | lineage1.1.2 | gb | ERR046829 | Sensitive | lineage3 | None | ERR046838 | Sensitive | lineage4.6.2.1 | gb | ERR046837 | Sensitive | lineage4.3.4.2.1 | gb | ERR046835 | Sensitive | lineage4.4.1.1 | None | ERR046844 | Other | lineage1.2.2.1 | gb | ERR046848 | Sensitive | lineage1.2.2.1 | gb | ERR046845 | Sensitive | lineage3.1.1 | gb | ERR046843 | Sensitive | lineage4.1.1.3.1 | gb | ERR046841 | Sensitive | lineage4.1.1 | gb | ERR046846 | Sensitive | lineage3 | gb | ERR046849 | Sensitive | lineage1.1.2 | gb | ERR046852 | Sensitive | lineage4.1.1.3.1 | gb | ERR046847 | Sensitive | lineage3.1.1 | gb | ERR046854 | Sensitive | lineage3.1.1 | gb | ERR046858 | Sensitive | lineage3.1.1 | gb | ERR046857 | Sensitive | lineage3.1.1 | gb | ERR046861 | Sensitive | lineage3.1.1 | gb | ERR046859 | Sensitive | lineage4.1.1.3 | gb | ERR046855 | MDR-TB | lineage1.1.2 | gb | ERR046867 | Sensitive | lineage3.1.1 | gb | ERR046856 | MDR-TB | lineage1.1.2 | gb | ERR046862 | Sensitive | lineage3 | gb | ERR046871 | Sensitive | lineage4.3.4.2.1 | gb | ERR046863 | Sensitive | lineage3 | gb | ERR046872 | Sensitive | lineage4.1.2.1 | gb | ERR046866 | Sensitive | lineage3.1.1 | gb | ERR046868 | Sensitive | lineage4.1.1.3 | gb | ERR046864 | Sensitive | lineage4.1.4 | gb | ERR046869 | Sensitive | lineage4.1.1.3 | gb | ERR046873 | Sensitive | lineage4.1.2.1 | gb | ERR046879 | Sensitive | lineage4.8.2 | gb | ERR046870 | Sensitive | lineage4.3.4.2.1 | gb | ERR046882 | Sensitive | lineage3 | gb | ERR046883 | Sensitive | lineage3 | gb | ERR046884 | Sensitive | lineage4.3.4.2.1 | gb | ERR046877 | Sensitive | lineage4.8.2 | gb | ERR046880 | Sensitive | lineage1.2.2.2 | gb | ERR046878 | Sensitive | lineage4.8.2 | gb | ERR046875 | Sensitive | lineage4.1.2.1 | gb | ERR046885 | Sensitive | lineage4.3.4.2.1 | gb | ERR046886 | Sensitive | lineage1.2.2.1 | None | ERR046887 | Sensitive | lineage4.3.3 | gb | ERR046890 | Sensitive | lineage4.8 | gb | ERR046892 | Sensitive | lineage4.4.2 | gb | ERR046891 | Sensitive | lineage1.1.2 | gb | ERR046897 | Sensitive | lineage4.4.1.1 | gb | ERR046898 | Sensitive | lineage1.2.2.1 | gb | ERR046895 | Sensitive | lineage3 | gb | ERR046901 | Sensitive | lineage4.4.1.1 | gb | ERR046900 | Sensitive | lineage1.1.2 | gb | ERR046899 | Sensitive | lineage4.8 | None | ERR046902 | Sensitive | lineage4.1.1.3 | None | ERR046903 | Pre-XDR-TB | lineage4.8 | gb | ERR046904 | Sensitive | lineage4.1.1.3.1 | gb | ERR046913 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046907 | Sensitive | lineage1.1.2 | gb | ERR046905 | Sensitive | lineage1.1.2 | gb | ERR046906 | Sensitive | lineage4.1.1 | gb | ERR046915 | Sensitive | lineage1.1.2 | gb | ERR046908 | Sensitive | lineage4.1.1.3.1 | gb | ERR046917 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046914 | Sensitive | lineage3.1.1 | gb | ERR046920 | Sensitive | lineage4.8.2 | gb | ERR046911 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046918 | RR-TB | lineage5.1.3 | gb | ERR046919 | Sensitive | lineage4.1.1.3.1 | gb | ERR046935 | Sensitive | lineage4.4.2 | gb | ERR046939 | Sensitive | lineage3.1.2.2 | gb | ERR046951 | Sensitive | lineage4.8 | gb | ERR046955 | Sensitive | lineage4.1.2.1 | None | ERR046953 | Sensitive | lineage4.8 | gb | ERR046957 | Sensitive | lineage4.1.2.1 | gb | ERR046973 | Sensitive | lineage4.1.2.1 | None | ERR046986 | MDR-TB | lineage4.1.1 | gb | ERR047003 | Sensitive | lineage2.2.1 | gb | ERR047006 | Sensitive | lineage4.8.1 | gb | ERR3797014 | Other | None | ERR1034652 | Other | None | ERR3283024 | Other | None | ERR3797047 | HR-TB | lineage4 | None | SRR1791708 | Other | La1.7.1 | None | SRR1791907 | Other | La1.8.1 | None | SRR1791780 | Other | La1.8.1 | None | SRR1791865 | Other | La1.8.1 | None | SRR1792002 | Other | La1.7.1 | None | SRR1791995 | Other | La1.8.1 | None | SRR1792124 | Other | La1.8.1 | None | SRR1792042 | Other | La1.8.1 | None | SRR1792059 | Other | La1.8.1 | None | SRR1792089 | Other | La1.8.1 | None | SRR1792282 | Other | La1.8.1 | None | SRR1792486 | Other | La1.7.1 | None | SRR2100069 | Sensitive | lineage4.1.1 | None | SRR1792499 | Other | La1.7.1 | None | SRR1792506 | Other | La1.8.1 | None | SRR18213841 | Sensitive | lineage4.8.2 | None | SRR2100070 | Sensitive | lineage4.1.1 | None | SRR2100072 | Other | La1.8.1 | None | SRR2100071 | Sensitive | lineage4.1.1 | None | SRR2100074 | Other | La1.8.1 | None | SRR2100083 | Sensitive | lineage3 | None | SRR2100077 | Sensitive | lineage3 | None | SRR2100088 | Sensitive | lineage3 | None | SRR2100080 | Sensitive | lineage3.1.2 | None | SRR2100082 | Sensitive | lineage3 | None | SRR2100079 | Sensitive | lineage3 | None | SRR2100078 | Sensitive | lineage3 | None | SRR2100084 | Sensitive | lineage3 | None | SRR2100081 | Sensitive | lineage3 | None | SRR2100087 | Sensitive | lineage3.1.2 | None | SRR2100095 | Sensitive | lineage4.1.2.1 | None | SRR2100090 | Sensitive | lineage3 | None | SRR2100091 | Sensitive | lineage3 | None | SRR2100086 | Other | lineage3.1.2 | None | SRR2100094 | Sensitive | lineage4.1.2.1 | None | SRR2100092 | Sensitive | lineage1.1.2 | None | ERR233355 | Sensitive | lineage7 | None | SRR6650235 | Other | lineage3 | None | SRR6650302 | Sensitive | lineage3 | None | SRR2467264 | Sensitive | lineage4.4.2 | None | SRR2469368 | Sensitive | lineage4.4.1.1 | None | ERR1200620 | MDR-TB | lineage4.2.2.2 | et | ERR233348 | Sensitive | lineage4.6.3 | et | ERR181315 | MDR-TB | lineage9 | so | ERR181440 | Sensitive | lineage2.2.1 | dj | ERR233361 | Sensitive | lineage2.2.1.1 | None | ERR233363 | Sensitive | lineage1.1.1 | None | ERR1200618 | Sensitive | lineage7 | None | ERR1200603 | Sensitive | lineage7 | None | ERR1193641 | Sensitive | lineage4.3.3 | et | ERR1200639 | Sensitive | lineage7 | et | ERR233362 | Sensitive | lineage6.1.1 | sn | SAMN03246408 | MDR-TB | lineage2.2.1 | cn | ERR1199039 | Sensitive | lineage4.6.1 | None | ERR233346 | Sensitive | lineage7 | None | ERR1200637 | Sensitive | lineage4.2.2.2 | et | ERR1200609 | Sensitive | lineage3 | et | ERR233368 | Sensitive | lineage6 | None | ERR212034 | HR-TB | None | SRR1723693_SRR1723694 | RR-TB | lineage2.2.1.1 | None | ERR1200631 | Sensitive | lineage7 | et | SRR1723905_SRR1723904 | MDR-TB | lineage4.5 | None | ERR233369 | Other | lineage4.8 | et | SRR4019487 | Other | La1.8.1 | None | SRR4019491 | Other | La1.7.1 | None | ERR1200613 | Sensitive | lineage7 | et | ERR234127 | Sensitive | lineage2.2.1 | None | ERR233364 | Other | lineage1.2.2.2 | cn | ERR1200630 | Sensitive | lineage3.1.1 | et | ERR234105 | Other | lineage2.2.1 | None | ERR234159 | Sensitive | lineage4.6.2.2 | None | ERR234148 | Sensitive | lineage6.3.1 | gh | ERR234138 | Sensitive | lineage2.2.1 | cn | ERR234128 | Sensitive | lineage2.2.1 | cn | ERR234153 | Sensitive | lineage3 | None | ERR234178 | Sensitive | lineage3 | None | ERR1200636 | Other | lineage7 | et | ERR1200605 | Other | lineage4.2.1 | et | ERR245674 | Sensitive | lineage1.1.3.2 | mw | ERR245697 | Sensitive | lineage4.3.4.1 | mw | ERR245702 | Sensitive | lineage3.1.1 | mw | ERR1200614 | Sensitive | lineage4.6.3 | et | ERR245740 | Sensitive | lineage4.1.2 | None | ERR245760 | Sensitive | lineage1.1.3.2 | mw | ERR245761 | Sensitive | lineage1.1.3.2 | mw | ERR245767 | Sensitive | lineage4.3.4.2.1 | mw | ERR245778 | Sensitive | lineage4.3.4.2.1 | mw | ERR245815 | Sensitive | lineage4.3.4.2.1 | None | ERR245819 | Other | lineage3.1.1 | None | ERR245821 | Other | lineage4.3.4.2.1 | None | ERR245824 | Sensitive | lineage4.3.4.2.1 | None | ERR245825 | Sensitive | lineage1.1.3 | None | ERR245838 | HR-TB | lineage3.1.1 | mw | ERR245837 | Sensitive | lineage2.2.1 | mw | ERR234212 | Sensitive | lineage4.9 | None | ERR1200612 | Sensitive | lineage7 | et | ERR1200606 | Sensitive | lineage7 | et | ERR233354 | Sensitive | lineage7 | None | ERR233359 | Sensitive | lineage2.2.2 | kr | ERR1200635 | Sensitive | lineage7 | et | ERR1200615 | Sensitive | lineage4.8 | et | ERR1200602 | Sensitive | lineage7 | et | ERR1035138 | MDR-TB | None | ERR233351 | Sensitive | lineage1.1.2 | et | ERR1200625 | Sensitive | lineage7 | et | ERR233360 | Sensitive | lineage3 | None | ERR1200604 | Sensitive | lineage7 | et | ERR1200634 | Sensitive | lineage7 | et | ERR1200632 | Sensitive | lineage1.1.3.1 | et | ERR233352 | Sensitive | lineage4.1.2.1 | None | ERR1200610 | Sensitive | lineage7 | et | ERR1200623 | Sensitive | lineage7 | et | ERR233366 | Sensitive | lineage6 | None | ERR2693231 | Other | None | ERR1200627 | Sensitive | lineage4.3.3 | et | ERR1200616 | Sensitive | lineage4.1.2.1 | et | ERR233350 | MDR-TB | lineage4.2.2.2 | et | ERR1200622 | Other | La1.3 | et | ERR1200628 | Sensitive | lineage4.1.2.1 | None | ERR1200624 | Sensitive | lineage7 | et | ERR2693230 | Other | None | ERR233365 | Sensitive | lineage1.1.1.1 | vn | ERR1200626 | Sensitive | lineage1.1.2 | et | SRR6044780 | Other | lineage4.9 | None | ERR233370 | Other | lineage2.2.1 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045384 | Other | lineage4.1.2 | None | ERR1200611 | Other | lineage4.6.3 | et | ERR1200640 | Sensitive | lineage7 | et | ERR1200619 | Sensitive | lineage7 | et | ERR233357 | Other | lineage2.2.1 | None | SRR857281 | MDR-TB | lineage4.3.3 | None | ERR233347 | Sensitive | lineage3 | None | SRR857294 | MDR-TB | lineage4.3.3 | None | SRR857286 | MDR-TB | lineage4.3.3 | None | SRR857295 | MDR-TB | lineage4.3.3 | None | ERR323039 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None |
---|