lineage | Count |
---|---|
lineage2.2.1 | 131 |
lineage1.2.2.1 | 2 |
lineage4.3.3 | 3 |
lineage4.2.1 | 2 |
lineage2.1 | 1 |
lineage4.8 | 1 |
lineage1.1.1 | 1 |
lineage4.8;lineage4.4.1.1.1 | 1 |
lineage4.2.2 | 2 |
lineage1.2.1.2.1 | 2 |
lineage4.7;lineage2.2.1 | 1 |
lineage4.6.2.2 | 1 |
lineage4.3.4.2.1 | 1 |
lineage2.2 | 1 |
lineage4.5 | 2 |
lineage4.1.2.1 | 1 |
lineage3 | 2 |
lineage3;lineage1.1.2 | 1 |
lineage3.1 | 1 |
spoligotype | Count |
---|---|
None | 157 |
ID | Drug resistance | Lineage | Country iso2 | SRR7781513 | Pre-XDR-TB | lineage2.2.1 | None | SRR7516422 | MDR-TB | lineage2.2.1 | None | ERR11043921 | Pre-XDR-TB | lineage2.2.1 | None | SRR7829579 | Pre-XDR-TB | lineage2.2.1 | None | ERR10219878 | Pre-XDR-TB | lineage2.2.1 | None | ERR11044362 | MDR-TB | lineage2.2.1 | None | ERR4596923 | MDR-TB | lineage1.2.2.1 | None | ERR4178141 | Other | lineage4.3.3 | None | SRR16088341 | MDR-TB | lineage2.2.1 | None | ERR144605 | HR-TB | lineage4.2.1 | ru | ERR4831637 | MDR-TB | lineage2.1 | vn | ERR4828779 | Pre-XDR-TB | lineage2.2.1 | None | ERR4828702 | MDR-TB | lineage2.2.1 | vn | ERR5865488 | MDR-TB | lineage2.2.1 | None | ERR5865489 | MDR-TB | lineage2.2.1 | None | ERR5865725 | MDR-TB | lineage2.2.1 | None | ERR5866095 | XDR-TB | lineage2.2.1 | None | ERR5865726 | MDR-TB | lineage2.2.1 | None | ERR5866089 | MDR-TB | lineage2.2.1 | None | ERR5866090 | MDR-TB | lineage2.2.1 | None | ERR5866412 | MDR-TB | lineage2.2.1 | None | ERR5866140 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866141 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866413 | MDR-TB | lineage2.2.1 | None | SRR16087906 | MDR-TB | lineage2.2.1 | None | ERR5866414 | MDR-TB | lineage2.2.1 | None | SRR16088583 | Pre-XDR-TB | lineage2.2.1 | None | ERR7975664 | MDR-TB | lineage2.2.1 | None | ERR6865843 | Other | lineage4.3.3 | None | SRR16088577 | MDR-TB | lineage2.2.1 | None | SRR24256375 | MDR-TB | lineage2.2.1 | None | SRR16088350 | MDR-TB | lineage2.2.1 | None | SRR16088417 | Pre-XDR-TB | lineage2.2.1 | None | SRR24255977 | MDR-TB | lineage2.2.1 | None | ERR7975655 | MDR-TB | lineage2.2.1 | None | ERR8773975 | HR-TB | lineage4.8 | None | SRR11972209 | MDR-TB | lineage1.1.1 | None | SRR16087907 | Pre-XDR-TB | lineage2.2.1 | None | SRR10315728 | MDR-TB | lineage4.8;lineage4.4.1.1.1 | None | SRR13180199 | Pre-XDR-TB | lineage2.2.1 | None | SRR15901693 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782630 | MDR-TB | lineage2.2.1 | None | SRR15901694 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256299 | MDR-TB | lineage2.2.1 | None | SRR18002900 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256039 | MDR-TB | lineage2.2.1 | None | SRR18715070 | MDR-TB | lineage2.2.1 | None | SRR18714924 | MDR-TB | lineage2.2.1 | None | SRR18911561 | Pre-XDR-TB | lineage4.2.2 | None | SRR18715400 | MDR-TB | lineage2.2.1 | None | SRR18715203 | MDR-TB | lineage2.2.1 | None | SRR18715285 | Pre-XDR-TB | lineage2.2.1 | None | SRR21576692 | MDR-TB | lineage1.2.1.2.1 | None | SRR21576572 | MDR-TB | lineage2.2.1 | None | SRR24827283 | Pre-XDR-TB | lineage4.2.2 | None | ERR11068412 | Pre-XDR-TB | lineage2.2.1 | None | SRR21727886 | MDR-TB | lineage2.2.1 | None | ERR11068618 | MDR-TB | lineage2.2.1 | None | ERR11068740 | Pre-XDR-TB | lineage2.2.1 | None | ERR11083014 | Pre-XDR-TB | lineage2.2.1 | None | ERR11082273 | MDR-TB | lineage4.7;lineage2.2.1 | None | ERR11068853 | Pre-XDR-TB | lineage2.2.1 | None | ERR11243536 | MDR-TB | lineage2.2.1 | None | ERR11243535 | MDR-TB | lineage2.2.1 | None | ERR11243537 | MDR-TB | lineage2.2.1 | None | SRR24256176 | MDR-TB | lineage2.2.1 | None | SRR24256077 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256052 | MDR-TB | lineage2.2.1 | None | SRR24256263 | MDR-TB | lineage2.2.1 | None | SRR24256098 | MDR-TB | lineage2.2.1 | None | SRR25206877 | Pre-XDR-TB | lineage2.2.1 | None | SRR25207234 | Pre-XDR-TB | lineage2.2.1 | None | SRR25207367 | MDR-TB | lineage2.2.1 | None | SRR24799275 | MDR-TB | lineage2.2.1 | None | SRR24827314 | MDR-TB | lineage2.2.1 | None | SRR24255915 | Pre-XDR-TB | lineage2.2.1 | None | SRR28239537 | MDR-TB | lineage2.2.1 | None | SRR24256190 | Pre-XDR-TB | lineage2.2.1 | None | SRR28239611 | MDR-TB | lineage2.2.1 | None | SRR28239883 | MDR-TB | lineage2.2.1 | None | SRR671840 | MDR-TB | lineage2.2.1 | cn | SRR671799 | Pre-XDR-TB | lineage2.2.1 | cn | SRR3085248 | Pre-XDR-TB | lineage2.2.1 | None | ERR133861 | MDR-TB | lineage2.2.1 | ru | SAMEA2534644 | MDR-TB | lineage2.2.1 | uz | SRR5153310 | MDR-TB | lineage2.2.1 | None | ERR751552 | Pre-XDR-TB | lineage2.2.1 | pe | ERR751522 | MDR-TB | lineage2.2.1 | pe | SRR2024971 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4820796 | HR-TB | lineage4.6.2.2 | None | ERR234616 | HR-TB | lineage4.2.1 | ru | ERR2707202 | MDR-TB | lineage4.3.4.2.1 | cd | ERR751562 | Pre-XDR-TB | lineage4.3.3 | pe | ERR751506 | MDR-TB | lineage2.2.1 | pe | ERR4827420 | MDR-TB | lineage2.2.1 | None | SRR20969770 | MDR-TB | lineage2.2 | None | ERR4827723 | MDR-TB | lineage2.2.1 | None | ERR4827721 | MDR-TB | lineage2.2.1 | None | ERR4831297 | MDR-TB | lineage2.2.1 | de | ERR1213839 | RR-TB | lineage4.5 | kr | ERR2677390 | Pre-XDR-TB | lineage2.2.1 | de | ERR4822302 | Pre-XDR-TB | lineage2.2.1 | de | ERR4810953 | MDR-TB | lineage2.2.1 | cn | ERR4822325 | Pre-XDR-TB | lineage2.2.1 | de | ERR2516438 | MDR-TB | lineage2.2.1 | nl | ERR4822555 | MDR-TB | lineage2.2.1 | ua | ERR4829040 | Pre-XDR-TB | lineage2.2.1 | None | ERR3256152 | HR-TB | lineage1.2.1.2.1 | ph | ERR4822398 | Pre-XDR-TB | lineage2.2.1 | ua | ERR2516723 | Pre-XDR-TB | lineage2.2.1 | pe | ERR4828687 | MDR-TB | lineage2.2.1 | None | ERR4828774 | Pre-XDR-TB | lineage2.2.1 | None | ERR4828787 | Pre-XDR-TB | lineage2.2.1 | None | SRR6484913 | Pre-XDR-TB | lineage2.2.1 | None | SRR6485041 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4810484 | MDR-TB | lineage2.2.1 | cn | ERR4828972 | MDR-TB | lineage2.2.1 | None | ERR4811562 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4829372 | Pre-XDR-TB | lineage2.2.1 | it | SRR6257051 | Pre-XDR-TB | lineage2.2.1 | None | SRR6484967 | MDR-TB | lineage2.2.1 | None | SRR6831995 | MDR-TB | lineage2.2.1 | None | ERR3132291 | RR-TB | lineage4.5 | None | ERR3077990 | MDR-TB | lineage1.2.2.1 | None | ERR2510185 | MDR-TB | lineage2.2.1 | pe | ERR4829386 | Pre-XDR-TB | lineage2.2.1 | it | SRR6831843 | MDR-TB | lineage2.2.1 | None | SRR6832017 | MDR-TB | lineage2.2.1 | None | SRR6832166 | MDR-TB | lineage2.2.1 | None | SRR6832114 | MDR-TB | lineage2.2.1 | None | SRR6832551 | MDR-TB | lineage2.2.1 | None | SRR6832216 | MDR-TB | lineage2.2.1 | None | SRR6832250 | MDR-TB | lineage2.2.1 | None | SRR6832362 | MDR-TB | lineage2.2.1 | None | SRR6832381 | MDR-TB | lineage2.2.1 | None | SRR6832288 | Pre-XDR-TB | lineage2.2.1 | None | SRR6832428 | Pre-XDR-TB | lineage2.2.1 | None | SRR6832561 | MDR-TB | lineage2.2.1 | None | SRR6832598 | MDR-TB | lineage2.2.1 | None | SRR6832564 | Pre-XDR-TB | lineage2.2.1 | None | SRR6964574 | MDR-TB | lineage3 | None | SRR6964556 | RR-TB | lineage3;lineage1.1.2 | None | SRR6832740 | MDR-TB | lineage2.2.1 | None | ERR3287381 | Pre-XDR-TB | lineage2.2.1 | pe | SRR6832769 | MDR-TB | lineage2.2.1 | None | SRR6832777 | MDR-TB | lineage2.2.1 | None | SRR6832856 | MDR-TB | lineage2.2.1 | None | ERR4813099 | Pre-XDR-TB | lineage2.2.1 | pe | ERR4829065 | MDR-TB | lineage2.2.1 | ng | ERR4829974 | MDR-TB | lineage3 | pk | ERR4829066 | MDR-TB | lineage2.2.1 | ng | ERR2510623 | Pre-XDR-TB | lineage3.1 | pk | ERR4829068 | MDR-TB | lineage2.2.1 | ng | ERR2510254 | Pre-XDR-TB | lineage2.2.1 | it | ERR2510329 | Pre-XDR-TB | lineage2.2.1 | it | ERR4829067 | MDR-TB | lineage2.2.1 | ng | ERR2510279 | Pre-XDR-TB | lineage2.2.1 | it |
---|