Rv3805c - c.84T>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
1 Sensitive
0 RR-TB
3 HR-TB
1 MDR-TB
110 Pre-XDR-TB
17 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 115 |
| lineage4.3.3 | 1 |
| lineage2.2.1;lineage3 | 5 |
| lineage2.2.1;lineage3;lineage4.8 | 2 |
| lineage2.2.1;lineage3;lineage4 | 1 |
| lineage2.2.1;lineage3;lineage4.2.2.2 | 1 |
| lineage1.1.2;lineage2.2.1;lineage4 | 1 |
| lineage2.2.1.1;lineage3 | 1 |
| lineage2.2.1.1 | 2 |
| lineage2.2.1;lineage3.1.2 | 2 |
| lineage1.1.3;lineage2.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 132 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR28351175 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267105 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266118 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266654 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266475 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266498 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261347 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827598 | Pre-XDR-TB | lineage2.2.1 | None | SRR21689672 | Sensitive | lineage4.3.3 | None | SRR28858649 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261210 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266109 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266657 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827362 | XDR-TB | lineage2.2.1;lineage3 | None | SRR25827696 | XDR-TB | lineage2.2.1 | None | SRR25827358 | Pre-XDR-TB | lineage2.2.1;lineage3;lineage4.8 | None | ERR13267068 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266607 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266866 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798858 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798048 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797144 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798767 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799826 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799929 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800080 | Pre-XDR-TB | lineage2.2.1 | in | ERR13266746 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267049 | XDR-TB | lineage2.2.1 | None | SRR28351166 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175216 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798826 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341367 | Pre-XDR-TB | lineage2.2.1 | in | ERR13266067 | Pre-XDR-TB | lineage2.2.1 | None | SRR28044681 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827324 | Pre-XDR-TB | lineage2.2.1;lineage3;lineage4 | None | SRR22175215 | XDR-TB | lineage2.2.1 | None | SRR16178828 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267138 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | ERR4796479 | XDR-TB | lineage2.2.1 | in | ERR4798261 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798723 | XDR-TB | lineage2.2.1 | in | SRR25827359 | Pre-XDR-TB | lineage2.2.1;lineage3;lineage4.8 | None | ERR4798831 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799719 | XDR-TB | lineage2.2.1 | in | ERR4797321 | Pre-XDR-TB | lineage2.2.1 | in | SRR25827649 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827834 | XDR-TB | lineage2.2.1 | None | SRR25827316 | Pre-XDR-TB | lineage2.2.1;lineage3;lineage4.2.2.2 | None | SRR25827755 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351577 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261991 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175256 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827323 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | SRR25827768 | XDR-TB | lineage1.1.2;lineage2.2.1;lineage4 | None | ERR13266940 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827879 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827801 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827570 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351161 | XDR-TB | lineage2.2.1 | None | SRR25827697 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045939 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796967 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798195 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797314 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799392 | Pre-XDR-TB | lineage2.2.1;lineage3 | in | ERR4797581 | Pre-XDR-TB | lineage2.2.1 | in | SRR5341349 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799839 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800043 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797696 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799646 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797770 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797834 | Pre-XDR-TB | lineage2.2.1 | in | SRR28044680 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800231 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800479 | Pre-XDR-TB | lineage2.2.1 | in | SRR25827711 | Pre-XDR-TB | lineage2.2.1.1;lineage3 | None | SRR25827446 | XDR-TB | lineage2.2.1 | None | SRR28045152 | XDR-TB | lineage2.2.1 | None | SRR25827765 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351352 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175212 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261128 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827385 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796468 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798423 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799131 | HR-TB | lineage2.2.1 | in | ERR4799252 | HR-TB | lineage2.2.1 | in | ERR4799214 | XDR-TB | lineage2.2.1 | in | ERR4796416 | Pre-XDR-TB | lineage2.2.1 | in | ERR4831017 | Pre-XDR-TB | lineage2.2.1 | np | SRR22424943 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261557 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261088 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266599 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827880 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR13261992 | XDR-TB | lineage2.2.1 | None | SRR22424838 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266808 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR25827668 | Pre-XDR-TB | lineage2.2.1;lineage3.1.2 | None | ERR4796843 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796914 | Pre-XDR-TB | lineage2.2.1 | in | ERR13261236 | XDR-TB | lineage2.2.1 | None | ERR4798749 | XDR-TB | lineage2.2.1 | in | ERR4797700 | HR-TB | lineage1.1.3;lineage2.2.1 | in | ERR4797672 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798748 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797778 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800539 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799029 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799136 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799210 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798929 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799437 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799477 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798588 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796516 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796460 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796869 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796812 | Pre-XDR-TB | lineage2.2.1 | in | SRR25827481 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | SRR22424832 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351268 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831029 | Pre-XDR-TB | lineage2.2.1 | np | SRR25827702 | MDR-TB | lineage2.2.1;lineage3.1.2 | None | SRR28351575 | XDR-TB | lineage2.2.1 | None | ERR13261487 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266141 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797137 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797072 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798058 | Pre-XDR-TB | lineage2.2.1 | in | SRR22424780 | Pre-XDR-TB | lineage2.2.1 | None |
|---|
