lineage | Count |
---|---|
lineage4.3.3 | 13 |
lineage2.2.1.1 | 8 |
lineage4.4 | 1 |
lineage4.1.1.3 | 5 |
lineage4.1.2.1 | 12 |
lineage2.2.1 | 79 |
lineage4.8 | 41 |
lineage2.2 | 1 |
lineage4.9 | 5 |
lineage4.2.1 | 2 |
lineage4.1.2 | 4 |
lineage4.3.4.2 | 5 |
lineage1.1.1 | 2 |
lineage4.7 | 2 |
lineage2.2.2 | 2 |
lineage4.6.2.2 | 6 |
lineage3 | 38 |
lineage1.1.1.1 | 2 |
lineage1.2.1.2.1 | 2 |
lineage4.4.1.1 | 5 |
lineage4.5 | 1 |
lineage4.2.2.2;lineage3 | 1 |
La1.8.2 | 2 |
La1.2 | 3 |
lineage6.3.1 | 2 |
lineage5.2 | 1 |
lineage4.1.2;lineage2.2.1.1 | 1 |
lineage4.3.4.1;lineage4.1.1 | 1 |
lineage4 | 2 |
4 | |
La1.7.1 | 1 |
La1.8.1 | 1 |
lineage4.2.2.2 | 1 |
lineage1.1.3.1 | 1 |
lineage1.1.2 | 15 |
lineage3.1.2 | 8 |
lineage3.1.2.1 | 5 |
lineage1.2.2.2 | 6 |
lineage1.1.3.3 | 2 |
lineage2.2.1.2 | 2 |
lineage3;lineage1.1.3.1 | 1 |
lineage4.3 | 1 |
lineage3.1 | 3 |
lineage4.4.1.2 | 2 |
lineage3;lineage1.1.2 | 1 |
lineage2.2.1;lineage1.1.2 | 2 |
lineage4.8;lineage3 | 1 |
lineage4.1.1 | 1 |
lineage4.1.3 | 1 |
lineage3.1.1 | 21 |
spoligotype | Count |
---|---|
None | 329 |
ID | Drug resistance | Lineage | Country iso2 | SRR7585427 | HR-TB | lineage4.3.3 | in | ERR7910846 | MDR-TB | lineage4.3.3 | pe | ERR7911310 | MDR-TB | lineage2.2.1.1 | vn | SRR7585421 | MDR-TB | lineage4.4 | None | ERR7910867 | MDR-TB | lineage4.1.1.3 | pe | ERR4820046 | Sensitive | lineage4.1.2.1 | None | ERR4829706 | HR-TB | lineage4.3.3 | it | ERR4827455 | MDR-TB | lineage2.2.1 | None | ERR7910855 | MDR-TB | lineage4.1.2.1 | pe | ERR7910992 | Sensitive | lineage4.8 | None | SRR16088222 | MDR-TB | lineage2.2 | None | SRR23082543 | Sensitive | lineage4.9 | None | ERR4827419 | Sensitive | lineage4.8 | None | ERR4827418 | MDR-TB | lineage2.2.1 | None | SRR11349207 | RR-TB | lineage2.2.1 | None | ERR4822290 | MDR-TB | lineage4.2.1 | None | ERR9285990 | Sensitive | lineage2.2.1 | None | ERR7764424 | Other | lineage4.1.1.3 | None | SRR8217904 | HR-TB | lineage4.1.2 | None | SRR19303870 | Sensitive | lineage4.8 | None | SRR6785510 | Sensitive | lineage4.8 | None | SRR7131230 | HR-TB | lineage4.3.4.2 | None | SRR14782708 | Other | lineage2.2.1 | None | ERR2843451 | HR-TB | lineage1.1.1 | None | SRR9971184 | RR-TB | lineage4.7 | None | ERR2843488 | Other | lineage2.2.2 | None | ERR4829268 | Sensitive | lineage4.8 | None | ERR4829996 | MDR-TB | lineage4.6.2.2 | None | ERR4829188 | Other | lineage4.6.2.2 | it | ERR4829950 | HR-TB | lineage3 | pk | ERR4829992 | RR-TB | lineage4.6.2.2 | None | ERR4830005 | Sensitive | lineage4.6.2.2 | None | ERR4828686 | Sensitive | lineage1.1.1.1 | vn | ERR4829279 | Sensitive | lineage4.1.2.1 | None | ERR4828361 | Other | lineage2.2.2 | vn | ERR4829338 | Sensitive | lineage4.6.2.2 | None | ERR4829412 | Pre-XDR-TB | lineage4.8 | it | ERR4828388 | HR-TB | lineage1.1.1 | None | ERR4829342 | Other | lineage2.2.1 | None | ERR4829410 | Sensitive | lineage4.1.2.1 | it | ERR4829452 | Sensitive | lineage1.2.1.2.1 | it | ERR4829465 | Sensitive | lineage4.1.1.3 | it | ERR4829590 | Sensitive | lineage4.1.2.1 | it | ERR4829734 | Sensitive | lineage4.4.1.1 | None | ERR4829618 | Sensitive | lineage4.1.2.1 | it | ERR4829637 | HR-TB | lineage3 | None | ERR4828809 | Sensitive | lineage4.1.2.1 | None | ERR4829622 | Pre-XDR-TB | lineage2.2.1 | None | ERR4829670 | Other | lineage4.1.2.1 | it | ERR4828858 | MDR-TB | lineage4.8 | None | ERR4828940 | Sensitive | lineage4.1.2.1 | it | ERR4828870 | Pre-XDR-TB | lineage4.8 | None | ERR4829753 | RR-TB | lineage2.2.1 | None | ERR4830757 | RR-TB | lineage4.5 | ir | ERR4828947 | Sensitive | lineage4.8 | it | ERR4828961 | MDR-TB | lineage4.1.2.1 | it | ERR4828973 | MDR-TB | lineage4.4.1.1 | None | ERR4829858 | Sensitive | lineage3 | it | SRR5818694 | RR-TB | lineage4.2.2.2;lineage3 | None | SRR14782820 | Sensitive | lineage4.8 | None | ERR6140775 | Other | La1.8.2 | None | ERR9125092 | Sensitive | lineage4.8 | None | SRR16058604 | Sensitive | lineage4.8 | None | SRR19303831 | Sensitive | lineage4.4.1.1 | None | SRR7131234 | Other | lineage4.9 | None | SRR7131141 | Sensitive | lineage4.8 | None | ERR6198445 | Other | La1.2 | None | ERR2677392 | MDR-TB | lineage3 | de | ERR4831455 | MDR-TB | lineage3 | None | ERR4831478 | MDR-TB | lineage3 | pk | ERR4972477 | MDR-TB | lineage4.3.3 | None | ERR4831472 | Pre-XDR-TB | lineage3 | None | ERR6201850 | Other | La1.2 | None | ERR6201864 | Other | La1.2 | None | ERR3170470 | Sensitive | lineage6.3.1 | gh | SRR14782595 | Sensitive | lineage4.8 | None | SRR14801750 | Sensitive | lineage4.3.3 | None | SRR16058097 | Sensitive | lineage4.8 | None | ERR3170475 | Sensitive | lineage5.2 | gh | ERR6140816 | Other | La1.8.2 | None | ERR9125310 | Sensitive | lineage4.8 | None | SRR18715396 | Sensitive | lineage2.2.1 | None | ERR9125139 | Sensitive | lineage4.8 | None | ERR9286059 | Sensitive | lineage4.3.4.2 | None | SRR16088228 | Other | lineage4.8 | None | ERR10748284 | MDR-TB | lineage2.2.1 | None | SRR22536487 | Pre-XDR-TB | lineage4.3.3 | None | ERR10748320 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR10748295 | MDR-TB | lineage4.1.2 | None | ERR10748325 | MDR-TB | lineage4.1.2;lineage2.2.1.1 | None | ERR10748328 | MDR-TB | lineage2.2.1 | None | ERR10969120 | Sensitive | lineage4.3.4.1;lineage4.1.1 | None | ERR10796619 | Other | lineage4.3.3 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR10969128 | RR-TB | lineage4.3.4.2 | None | ERR11044908 | Sensitive | lineage4.1.2.1 | None | ERR10969133 | Sensitive | lineage4.1.2 | None | ERR11044962 | Sensitive | lineage4 | None | ERR1194808 | HR-TB | lineage2.2.1 | None | ERR1194814 | Other | lineage2.2.1 | None | ERR1194816 | Other | lineage2.2.1 | None | ERR4553596 | MDR-TB | None | ERR3445501 | HR-TB | None | ERR4276853 | MDR-TB | lineage4.2.1 | None | ERR4450963 | Other | La1.7.1 | None | ERR4553563 | MDR-TB | lineage4.3.4.2 | None | ERR4627375 | Other | La1.8.1 | None | ERR4796258 | Sensitive | lineage4.8 | in | ERR11049502 | Sensitive | lineage4.3.3 | None | ERR4796344 | Other | lineage3 | in | ERR4796331 | HR-TB | lineage4.9 | in | ERR4796340 | Sensitive | lineage4.8 | in | ERR4796491 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4796396 | Other | lineage4.2.2.2 | in | ERR4796426 | Sensitive | lineage1.1.3.1 | in | ERR4796476 | Sensitive | lineage3 | in | ERR4796508 | Sensitive | lineage1.1.2 | in | ERR4796563 | Sensitive | lineage4.8 | in | ERR4796560 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796577 | MDR-TB | None | ERR4796611 | Sensitive | lineage3 | in | ERR4796607 | MDR-TB | lineage3.1.2 | in | ERR4796636 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796684 | Sensitive | lineage3 | in | ERR4796645 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796657 | MDR-TB | lineage4.8 | in | ERR4796660 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796685 | Sensitive | lineage3.1.2 | in | ERR4796705 | Sensitive | lineage3 | in | ERR4796699 | Other | lineage3.1.2.1 | in | ERR4796737 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796729 | Other | lineage1.1.2 | in | ERR4796744 | MDR-TB | lineage1.2.2.2 | in | ERR4796851 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796742 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796774 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796779 | Pre-XDR-TB | lineage3.1.2 | in | ERR4796830 | Sensitive | lineage3 | in | ERR4796853 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796876 | MDR-TB | lineage3.1.2.1 | in | ERR4796845 | MDR-TB | lineage2.2.1 | in | ERR4796855 | Pre-XDR-TB | lineage3 | in | ERR4796884 | MDR-TB | lineage2.2.1 | in | ERR4796889 | Sensitive | lineage3 | in | ERR4796883 | Sensitive | lineage3.1.2 | in | ERR4796934 | Sensitive | lineage4.3.3 | in | ERR4796943 | Sensitive | lineage1.2.1.2.1 | in | ERR4796945 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796944 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796948 | MDR-TB | lineage2.2.1 | in | ERR4796958 | Other | lineage1.1.3.3 | in | ERR4796954 | MDR-TB | lineage3.1.2.1 | in | ERR4796951 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796964 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796950 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796974 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796966 | MDR-TB | lineage2.2.1 | in | ERR4796984 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796973 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796977 | MDR-TB | lineage2.2.1.2 | in | ERR4796991 | Sensitive | lineage4.7 | in | ERR4796988 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796994 | Sensitive | lineage3 | in | ERR4797006 | Sensitive | lineage3 | in | ERR4796996 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796933 | Pre-XDR-TB | lineage4.8 | in | ERR4797014 | MDR-TB | lineage1.2.2.2 | in | ERR4797012 | Sensitive | lineage1.1.2 | None | ERR4797011 | Sensitive | lineage3;lineage1.1.3.1 | in | ERR4797019 | Pre-XDR-TB | lineage4.3 | in | ERR4797013 | Sensitive | lineage2.2.1 | in | ERR4797020 | MDR-TB | lineage3 | in | ERR4797015 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797018 | MDR-TB | lineage4.3.3 | in | ERR4797023 | Sensitive | lineage4.1.1.3 | in | ERR4797029 | Sensitive | lineage1.1.2 | in | ERR4797028 | Pre-XDR-TB | lineage1.1.2 | in | ERR4797030 | Sensitive | lineage1.1.2 | in | ERR4797041 | Sensitive | lineage3 | in | ERR4797031 | HR-TB | lineage3 | in | ERR4797045 | Other | lineage4.8 | in | ERR4797034 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4797051 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797044 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797042 | MDR-TB | lineage3.1.2 | in | ERR4797046 | HR-TB | lineage1.2.2.2 | in | ERR4797039 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797053 | MDR-TB | lineage3.1.2 | in | ERR4797047 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4797052 | MDR-TB | lineage1.2.2.2 | in | ERR4797069 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797056 | MDR-TB | lineage2.2.1.1 | in | ERR4797061 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4797066 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797059 | Pre-XDR-TB | lineage4.1.2 | in | ERR4797062 | Sensitive | lineage3.1 | in | ERR4797070 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797067 | Sensitive | lineage3 | in | ERR4797073 | Sensitive | lineage1.1.2 | in | ERR4797071 | Sensitive | lineage2.2.1 | in | ERR4797076 | Sensitive | lineage3 | in | ERR4797077 | Sensitive | lineage3 | in | ERR4797080 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797074 | Pre-XDR-TB | lineage4.8 | in | ERR4797083 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4797086 | Other | lineage4.4.1.2 | in | ERR4797081 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797084 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797087 | Sensitive | lineage1.1.2 | in | ERR4797095 | MDR-TB | in | ERR4797088 | Other | lineage3.1.2.1 | in | ERR4797100 | MDR-TB | lineage3;lineage1.1.2 | in | ERR4797103 | Sensitive | lineage4.3.3 | in | ERR4797098 | Sensitive | lineage1.1.2 | in | ERR4797113 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797097 | Pre-XDR-TB | lineage2.2.1;lineage1.1.2 | in | ERR4797099 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797115 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797119 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797126 | Other | lineage3 | in | ERR4797132 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797128 | Other | lineage2.2.1;lineage1.1.2 | in | ERR4797153 | Sensitive | lineage3 | in | ERR4797131 | MDR-TB | lineage2.2.1 | in | ERR4797135 | Sensitive | lineage3 | in | ERR4797136 | Sensitive | lineage1.1.2 | in | ERR4797148 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797147 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797287 | MDR-TB | lineage3 | in | ERR4797156 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797342 | Sensitive | lineage4.4.1.2 | in | ERR4797294 | Sensitive | lineage1.1.2 | in | ERR4797467 | Other | lineage1.1.2 | in | ERR4797369 | Sensitive | lineage1.2.2.2 | in | ERR4797407 | RR-TB | lineage3 | in | ERR4797433 | Sensitive | lineage1.1.3.3 | in | ERR4797437 | Sensitive | lineage3.1.2 | in | ERR4797459 | MDR-TB | lineage2.2.1 | in | ERR4797401 | Pre-XDR-TB | lineage3 | in | ERR4797427 | Sensitive | lineage4.8;lineage3 | in | ERR4797471 | Pre-XDR-TB | lineage4.9 | in | ERR4797503 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797493 | Sensitive | lineage4.1.1 | None | ERR4797502 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797495 | Sensitive | lineage3 | in | ERR4797497 | HR-TB | lineage1.1.2 | in | ERR4797512 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797539 | MDR-TB | lineage2.2.1 | in | ERR4797513 | Sensitive | lineage3.1.2 | in | ERR4797529 | MDR-TB | lineage2.2.1 | in | ERR4797522 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797543 | Sensitive | lineage3 | in | ERR4797537 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797516 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797523 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797542 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4797739 | Pre-XDR-TB | lineage3.1 | in | ERR4797552 | Other | lineage1.1.2 | in | ERR4797561 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797601 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797629 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797699 | Sensitive | lineage3 | in | ERR4797549 | MDR-TB | lineage2.2.1 | in | ERR4797571 | Sensitive | lineage3.1.2.1 | in | ERR4797581 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797632 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797905 | Sensitive | lineage1.1.2 | in | ERR4797802 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797784 | Sensitive | lineage3 | in | ERR4798307 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797917 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798121 | MDR-TB | lineage4.3.3 | in | ERR4811408 | Sensitive | lineage4.6.2.2 | None | ERR4811384 | Sensitive | lineage6.3.1 | None | ERR4811432 | Sensitive | lineage4.3.3 | None | ERR4811443 | Sensitive | lineage4.1.3 | None | ERR4815314 | Other | lineage2.2.1.2 | gb | SRR6339663 | MDR-TB | lineage1.1.1.1 | None | ERR7910864 | MDR-TB | lineage4.8 | pe | ERR2027255 | HR-TB | lineage4.4.1.1 | None | ERR1949956 | Sensitive | lineage4.8 | None | ERR1949989 | Sensitive | lineage4.8 | None | ERR1950032 | Sensitive | lineage4.8 | None | ERR1949966 | Sensitive | lineage4 | None | ERR1950024 | Sensitive | lineage4.8 | None | ERR1950039 | Sensitive | lineage4.8 | None | ERR2229553 | Sensitive | lineage4.8 | None | ERR1950055 | Sensitive | lineage4.8 | None | ERR2229616 | Sensitive | lineage4.8 | dk | ERR2229605 | Sensitive | lineage4.8 | None | ERR2229608 | HR-TB | lineage4.8 | None | ERR2228813 | Other | lineage4.8 | None | ERR2229241 | Other | lineage4.8 | None | ERR2229304 | Sensitive | lineage4.8 | dk | ERR2229372 | Sensitive | lineage4.8 | dk | ERR2245276 | HR-TB | lineage3.1 | no | ERR2228843 | Sensitive | lineage4.8 | dk | ERR2245283 | Other | lineage3.1.1 | None | ERR2245278 | Sensitive | lineage3.1.1 | no | ERR2245287 | Sensitive | lineage3.1.1 | no | ERR2245291 | Sensitive | lineage3.1.1 | no | ERR2245290 | Other | lineage3.1.1 | no | ERR2510503 | MDR-TB | lineage3 | pk | ERR2245297 | Sensitive | lineage3.1.1 | no | ERR2245304 | Sensitive | lineage3.1.1 | no | ERR2245337 | Other | lineage3.1.1 | no | ERR2245342 | RR-TB | lineage3.1.1 | no | ERR2245344 | Sensitive | lineage3.1.1 | no | ERR2510792 | Sensitive | lineage4.9 | it | ERR2245348 | Sensitive | lineage3.1.1 | None | ERR2245357 | Sensitive | lineage3.1.1 | None | ERR2245351 | Sensitive | lineage3 | None | ERR2245350 | Other | lineage3.1.1 | no | ERR2245356 | Other | lineage3.1.1 | no | ERR2245353 | Sensitive | lineage3.1.1 | no | ERR2245360 | Sensitive | lineage3.1.1 | None | ERR2245367 | Sensitive | lineage3.1.1 | no | ERR2245365 | HR-TB | lineage3.1.1 | no | ERR2510517 | Pre-XDR-TB | lineage3 | pk | ERR2510796 | HR-TB | lineage4.3.4.2 | it | ERR2512375 | Sensitive | lineage3.1.1 | no | ERR2512376 | Sensitive | lineage3.1.1 | no | ERR2512378 | Sensitive | lineage3.1.1 | no | ERR2510255 | Sensitive | lineage1.2.2.2 | pk | ERR978802 | Sensitive | lineage4.4.1.1 | gl | ERR7910870 | Pre-XDR-TB | lineage2.2.1 | pe | ERR2510259 | Other | lineage3 | None | ERR2510285 | MDR-TB | lineage3 | pk | SRR6339662 | MDR-TB | lineage2.2.1 | au |
---|