Rv3854c - c.1010delT
Drug resistance types
0 Sensitive
0 RR-TB
0 HR-TB
101 MDR-TB
72 Pre-XDR-TB
1 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 167 |
| lineage4.2.1;lineage2.2.1 | 1 |
| lineage4;lineage2.2.1 | 2 |
| lineage4.9;lineage2.2.1 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.3.3;lineage2.2.1 | 1 |
| lineage2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 174 |
Geographic prevalence
Country level data for this variant is available for 40 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6257107 | MDR-TB | lineage2.2.1 | None | SRR6356941 | MDR-TB | lineage2.2.1 | None | SRR6485130 | Pre-XDR-TB | lineage2.2.1 | None | SRR6256983 | MDR-TB | lineage2.2.1 | None | SRR6484910 | Pre-XDR-TB | lineage2.2.1 | None | SRR6356926 | MDR-TB | lineage2.2.1 | None | SRR6357007 | Pre-XDR-TB | lineage2.2.1 | None | SRR6484895 | Pre-XDR-TB | lineage2.2.1 | None | SRR6257091 | MDR-TB | lineage2.2.1 | None | SRR8327860 | MDR-TB | lineage2.2.1 | None | SRR6785441 | MDR-TB | lineage2.2.1 | None | SRR8327216 | Pre-XDR-TB | lineage2.2.1 | None | SRR6914120 | MDR-TB | lineage2.2.1 | None | SRR8330159 | Pre-XDR-TB | lineage2.2.1 | None | SRR8335313 | Pre-XDR-TB | lineage2.2.1 | None | SRR8335024 | Pre-XDR-TB | lineage2.2.1 | None | SRR8347538 | Pre-XDR-TB | lineage2.2.1 | None | SRR7516458 | Pre-XDR-TB | lineage2.2.1 | None | SRR8335148 | Pre-XDR-TB | lineage2.2.1 | None | SRR8335314 | Pre-XDR-TB | lineage2.2.1 | None | SRR8352462 | Pre-XDR-TB | lineage2.2.1 | None | SRR8344409 | Pre-XDR-TB | lineage2.2.1 | None | SRR8352208 | Pre-XDR-TB | lineage2.2.1 | None | SRR8348943 | MDR-TB | lineage2.2.1 | None | SRR8347539 | Pre-XDR-TB | lineage2.2.1 | None | SRR8353274 | MDR-TB | lineage2.2.1 | None | SRR8353483 | MDR-TB | lineage2.2.1 | None | SRR8357274 | Pre-XDR-TB | lineage2.2.1 | None | SRR8354461 | Pre-XDR-TB | lineage2.2.1 | None | SRR8358501 | Pre-XDR-TB | lineage2.2.1 | None | SRR8362669 | MDR-TB | lineage2.2.1 | None | SRR8358462 | Pre-XDR-TB | lineage2.2.1 | None | SRR8368398 | Pre-XDR-TB | lineage2.2.1 | None | SRR8366172 | Pre-XDR-TB | lineage2.2.1 | None | SRR8362612 | Pre-XDR-TB | lineage2.2.1 | None | SRR8368738 | Pre-XDR-TB | lineage2.2.1 | None | SRR8369295 | MDR-TB | lineage2.2.1 | None | SRR8370129 | Pre-XDR-TB | lineage2.2.1 | None | SRR8370130 | Pre-XDR-TB | lineage2.2.1 | None | SRR8374278 | Pre-XDR-TB | lineage2.2.1 | None | SRR8379901 | MDR-TB | lineage2.2.1 | None | SRR8369848 | Pre-XDR-TB | lineage2.2.1 | None | SRR8426713 | Pre-XDR-TB | lineage2.2.1 | None | SRR8423050 | Pre-XDR-TB | lineage2.2.1 | None | SRR8426601 | Pre-XDR-TB | lineage2.2.1 | None | SRR8426907 | Pre-XDR-TB | lineage2.2.1 | None | SRR8433213 | Pre-XDR-TB | lineage2.2.1 | None | SRR8429911 | MDR-TB | lineage2.2.1 | None | SRR7653609 | Pre-XDR-TB | lineage2.2.1 | None | SRR7657748 | MDR-TB | lineage4.2.1;lineage2.2.1 | None | SRR998860 | MDR-TB | lineage2.2.1 | None | SRR8847008 | MDR-TB | lineage2.2.1 | None | ERR019551 | Pre-XDR-TB | lineage2.2.1 | None | ERR017785 | MDR-TB | lineage4;lineage2.2.1 | None | ERR027456 | MDR-TB | lineage2.2.1 | ru | ERR019859 | MDR-TB | lineage4;lineage2.2.1 | None | ERR027452 | MDR-TB | lineage2.2.1 | ru | ERR067644 | Pre-XDR-TB | lineage2.2.1 | ru | ERR027468 | MDR-TB | lineage2.2.1 | None | ERR067631 | MDR-TB | lineage2.2.1 | ru | ERR027465 | MDR-TB | lineage4.9;lineage2.2.1 | None | ERR067668 | MDR-TB | lineage2.2.1 | ru | ERR067659 | MDR-TB | lineage2.2.1 | ru | ERR067667 | MDR-TB | lineage2.2.1 | ru | ERR067755 | MDR-TB | lineage2.2.1 | ru | ERR067671 | Pre-XDR-TB | lineage2.2.1 | ru | ERR067694 | MDR-TB | lineage2.2.1 | ru | ERR067723 | MDR-TB | lineage2.2.1 | ru | ERR067744 | Pre-XDR-TB | lineage2.2.1 | ru | ERR067749 | MDR-TB | lineage2.2.1 | ru | ERR067760 | Pre-XDR-TB | lineage2.2.1 | ru | ERR117464 | Pre-XDR-TB | lineage2.2.1 | ru | ERR108443 | MDR-TB | lineage2.2.1 | ru | ERR11043979 | MDR-TB | lineage2.2.1 | None | ERR10762395 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762436 | Pre-XDR-TB | lineage2.2.1 | None | ERR108435 | Pre-XDR-TB | lineage2.2.1 | ru | ERR133884 | MDR-TB | lineage2.2.1 | ru | ERR133880 | MDR-TB | lineage2.2.1 | ru | ERR133907 | MDR-TB | lineage2.2.1 | ru | ERR133951 | Pre-XDR-TB | lineage2.2.1 | ru | ERR133918 | MDR-TB | lineage2.2.1 | ru | ERR137192 | MDR-TB | lineage2.2.1 | ru | ERR137254 | Pre-XDR-TB | lineage2.2.1 | ru | ERR137247 | Pre-XDR-TB | lineage2.2.1 | ru | ERR137231 | Pre-XDR-TB | lineage2.2.1 | ru | ERR137257 | Pre-XDR-TB | lineage2.2.1 | ru | ERR144595 | Pre-XDR-TB | lineage2.2.1 | ru | ERR144584 | MDR-TB | lineage2.2.1 | ru | ERR3639750 | MDR-TB | lineage2.2.1 | None | ERR3287415 | MDR-TB | lineage4.1.1.3 | pe | ERR403282 | Pre-XDR-TB | lineage4.3.3;lineage2.2.1 | None | ERR403279 | MDR-TB | lineage2.2.1 | None | ERR403295 | MDR-TB | lineage2.2.1 | None | ERR403284 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864709 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864707 | MDR-TB | lineage2.2.1 | None | ERR5864710 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864931 | MDR-TB | lineage2.2.1 | None | ERR5864708 | MDR-TB | lineage2.2.1 | None | ERR5864927 | MDR-TB | lineage2.2.1 | None | ERR5864711 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864928 | MDR-TB | lineage2.2.1 | None | ERR5864930 | MDR-TB | lineage2.2.1 | None | ERR5864932 | MDR-TB | lineage2.2.1 | None | ERR5864929 | MDR-TB | lineage2.2.1 | None | ERR5864933 | MDR-TB | lineage2.2.1 | None | ERR5864934 | MDR-TB | lineage2.2.1 | None | ERR5864935 | MDR-TB | lineage2.2.1 | None | ERR5864936 | MDR-TB | lineage2.2.1 | None | ERR5865710 | MDR-TB | lineage2.2.1 | None | ERR5864937 | MDR-TB | lineage2.2.1 | None | ERR5865212 | MDR-TB | lineage2.2.1 | None | ERR5865210 | MDR-TB | lineage2.2.1 | None | ERR5865709 | MDR-TB | lineage2.2.1 | None | ERR5865211 | MDR-TB | lineage2.2.1 | None | ERR5865770 | MDR-TB | lineage2.2.1 | None | ERR5865769 | MDR-TB | lineage2.2.1 | None | ERR5865880 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865909 | MDR-TB | lineage2.2.1 | None | ERR5865912 | MDR-TB | lineage2.2.1 | None | ERR5866133 | MDR-TB | lineage2.2.1 | None | ERR5865907 | MDR-TB | lineage2.2.1 | None | ERR5866132 | MDR-TB | lineage2.2.1 | None | ERR5865908 | MDR-TB | lineage2.2.1 | None | ERR5866131 | MDR-TB | lineage2.2.1 | None | ERR5866381 | MDR-TB | lineage2.2.1 | None | ERR5866379 | MDR-TB | lineage2.2.1 | None | ERR5866411 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866380 | MDR-TB | lineage2.2.1 | None | ERR5866409 | Pre-XDR-TB | lineage2.2.1 | None | ERR7362017 | XDR-TB | lineage2.2.1 | None | ERR5866410 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866560 | Pre-XDR-TB | lineage2.2.1 | None | SRR10397167 | MDR-TB | lineage2.2.1 | None | ERR7362021 | Pre-XDR-TB | lineage2.2.1 | None | ERR7975653 | MDR-TB | lineage2.2.1 | None | ERR8665612 | Pre-XDR-TB | lineage2.2.1 | None | ERR8773989 | MDR-TB | lineage2.2.1 | None | SRR10397111 | MDR-TB | lineage2.2.1 | None | SRR10397265 | Pre-XDR-TB | lineage2.2.1 | None | SRR10397212 | Pre-XDR-TB | lineage2.2.1 | None | SRR11033743 | MDR-TB | lineage2.2.1 | None | SRR13120442 | MDR-TB | lineage2.2.1 | None | SRR14801432 | MDR-TB | lineage2.2.1 | None | SRR14801595 | Pre-XDR-TB | lineage2.2.1 | None | SRR3085258 | MDR-TB | lineage2.2.1 | None | ERR11081373 | MDR-TB | lineage2.2.1 | None | SRR23861996 | MDR-TB | lineage2.2.1 | None | ERR11243562 | MDR-TB | lineage2.2.1 | None | SRR14801966 | MDR-TB | lineage2.2.1 | None | SRR18715388 | MDR-TB | lineage2.2.1 | None | SRR3082116 | MDR-TB | lineage2.2.1 | None | ERR158597 | MDR-TB | lineage2.2.1 | ru | ERR158588 | Pre-XDR-TB | lineage2.2.1 | ru | SRR3743438 | Pre-XDR-TB | lineage2.2.1 | None | SRR3743415 | Pre-XDR-TB | lineage2.2.1 | None | ERR227977 | MDR-TB | lineage2.2.1 | ru | ERR4827973 | MDR-TB | lineage2.2.1 | None | ERR229976 | MDR-TB | lineage2.2.1 | ru | SRR23310845 | MDR-TB | lineage2.2 | None | ERR229949 | MDR-TB | lineage2.2.1 | ru | ERR234597 | MDR-TB | lineage2.2.1 | ru | ERR234639 | Pre-XDR-TB | lineage2.2.1 | ru | ERR234644 | Pre-XDR-TB | lineage2.2.1 | ru | ERR4822385 | Pre-XDR-TB | lineage2.2.1 | kg | ERR4827982 | Pre-XDR-TB | lineage2.2.1 | None | ERR4828015 | MDR-TB | lineage2.2.1 | None | ERR4827456 | MDR-TB | lineage2.2.1 | None | ERR4827995 | MDR-TB | lineage2.2.1 | None | ERR4830161 | MDR-TB | lineage2.2.1 | None | ERR015614 | MDR-TB | lineage2.2.1 | ru | ERR4830145 | Pre-XDR-TB | lineage2.2.1 | None | ERR4828001 | MDR-TB | lineage2.2.1 | None |
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