Rv3854c - c.1047delT
Drug resistance types
0 Sensitive
2 RR-TB
11 HR-TB
32 MDR-TB
32 Pre-XDR-TB
7 XDR-TB
6 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.4.1.1.1 | 1 |
| lineage4.8 | 9 |
| lineage4.1.2 | 1 |
| lineage4.1.2.1 | 5 |
| lineage3 | 7 |
| lineage4.3.3 | 6 |
| lineage1.1.3.1 | 3 |
| lineage2.2.1.1 | 4 |
| lineage4.6.1.2 | 4 |
| lineage2.2.1 | 26 |
| lineage4.8;lineage2.2.1 | 2 |
| lineage4.9 | 5 |
| lineage4.1.1 | 1 |
| 3 | |
| lineage2.2.1.2 | 2 |
| lineage3.1.2 | 2 |
| lineage4.5 | 2 |
| lineage4.1.1.3 | 2 |
| lineage4.3.2.1;lineage2.2.1 | 2 |
| lineage1.1.3 | 1 |
| lineage4 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 90 |
Geographic prevalence
Country level data for this variant is available for 38 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR4035621 | Other | lineage4.4.1.1.1 | None | ERR2229486 | Other | lineage4.8 | None | SAMEA2533722 | MDR-TB | lineage4.8 | uz | SRR4035795 | HR-TB | lineage4.1.2 | None | ERR2513784 | HR-TB | lineage4.1.2.1 | gb | SRR5341327 | HR-TB | lineage3 | in | ERR2516496 | MDR-TB | lineage4.3.3 | pe | SAMN02414928 | MDR-TB | lineage1.1.3.1 | se | SRR5341391 | HR-TB | lineage3 | in | ERR2516206 | Pre-XDR-TB | lineage4.3.3 | be | ERR2517125 | MDR-TB | lineage2.2.1.1 | gb | ERR2707024 | MDR-TB | lineage4.6.1.2 | cd | ERR270672 | HR-TB | lineage4.1.2.1 | None | SAMEA2535039 | MDR-TB | lineage4.8 | uz | ERR2707026 | MDR-TB | lineage4.6.1.2 | cd | ERR270704 | HR-TB | lineage4.1.2.1 | None | ERR2707020 | MDR-TB | lineage4.6.1.2 | cd | ERR4827754 | MDR-TB | lineage2.2.1 | None | ERR4822586 | Pre-XDR-TB | lineage4.8;lineage2.2.1 | tm | ERR4822594 | Pre-XDR-TB | lineage4.8;lineage2.2.1 | tm | ERR4828974 | Pre-XDR-TB | lineage4.9 | it | ERR4827753 | MDR-TB | lineage2.2.1 | None | SRR5837710 | Pre-XDR-TB | lineage2.2.1.1 | th | ERR4829392 | Pre-XDR-TB | lineage4.9 | it | SRR6485153 | Other | lineage4.3.3 | None | SRR6831902 | Pre-XDR-TB | lineage2.2.1 | None | ERR3132179 | Pre-XDR-TB | lineage2.2.1 | None | ERR3132175 | Pre-XDR-TB | lineage2.2.1 | None | SRR7517690 | XDR-TB | lineage2.2.1 | None | ERR046825 | RR-TB | lineage4.1.1 | gb | SRR7517820 | XDR-TB | lineage2.2.1 | None | ERR1034614 | Pre-XDR-TB | lineage3 | pk | ERR1199105 | MDR-TB | lineage4.6.1.2 | cd | ERR4797228 | Pre-XDR-TB | lineage2.2.1 | in | ERR3287451 | MDR-TB | lineage4.3.3 | pe | ERR4796544 | Pre-XDR-TB | lineage3 | in | ERR4796360 | XDR-TB | lineage2.2.1 | in | ERR4796773 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797772 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797313 | HR-TB | None | ERR4797726 | MDR-TB | lineage3 | in | ERR4797938 | HR-TB | lineage3 | in | ERR4797961 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800718 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4799874 | Pre-XDR-TB | lineage3.1.2 | in | ERR4799886 | MDR-TB | lineage4.8 | in | ERR4800319 | MDR-TB | lineage4.8 | in | ERR4800344 | Pre-XDR-TB | lineage3.1.2 | in | ERR4800371 | MDR-TB | lineage2.2.1.1 | in | ERR751527 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR5865942 | MDR-TB | lineage4.8 | None | ERR688046 | Pre-XDR-TB | lineage3 | None | ERR751383 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR789236 | XDR-TB | lineage2.2.1 | None | ERR7764346 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR789235 | XDR-TB | lineage2.2.1 | None | ERR789239 | Pre-XDR-TB | lineage2.2.1 | None | ERR789237 | Pre-XDR-TB | lineage2.2.1 | None | ERR789234 | XDR-TB | lineage2.2.1 | None | ERR789238 | XDR-TB | lineage2.2.1 | None | ERR8665537 | Pre-XDR-TB | lineage4.3.3 | None | ERR8665868 | Pre-XDR-TB | lineage4.3.3 | None | ERR9125330 | MDR-TB | lineage4.5 | None | ERR8773609 | MDR-TB | lineage2.2.1 | None | ERR8773611 | MDR-TB | lineage2.2.1 | None | SRR11444106 | HR-TB | lineage4.1.1.3 | None | SRR10303343 | MDR-TB | lineage4.3.2.1;lineage2.2.1 | None | SRR10430396 | MDR-TB | lineage4.3.2.1;lineage2.2.1 | None | SRR21747027 | Pre-XDR-TB | lineage2.2.1 | None | SRR1163305 | MDR-TB | lineage1.1.3.1 | None | SRR13180240 | MDR-TB | lineage2.2.1 | None | SRR16058058 | MDR-TB | lineage4.5 | None | SRR16088226 | HR-TB | lineage4.8 | None | SRR1144834 | MDR-TB | None | SRR1146286 | MDR-TB | lineage1.1.3 | None | SRR1163293 | MDR-TB | lineage1.1.3.1 | None | SRR15901690 | Pre-XDR-TB | lineage4.9 | None | SRR15901692 | Pre-XDR-TB | lineage4.9 | None | SRR21677854 | Other | lineage4.1.1.3 | None | SRR21685367 | MDR-TB | lineage2.2.1 | None | SAMEA2534268 | MDR-TB | lineage4.8 | uz | ERR11081565 | Pre-XDR-TB | lineage2.2.1 | None | SRR8692905 | HR-TB | None | ERR10610327 | Other | lineage4.9 | None | SRR21887646 | MDR-TB | lineage2.2.1 | None | SRR8692790 | RR-TB | lineage4 | None | SRR8692800 | Other | lineage4 | None | SRR3105788 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR4813131 | Pre-XDR-TB | lineage2.2.1 | None | SAMEA2534200 | MDR-TB | lineage4.8 | uz |
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