Rv3854c - c.1047delT
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
1 RR-TB
10 HR-TB
55 MDR-TB
52 Pre-XDR-TB
12 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.3 | 8 |
| lineage3 | 8 |
| lineage4.6.1.2 | 8 |
| lineage4.1.1.1 | 1 |
| lineage4.9 | 16 |
| lineage4.1.2.1 | 5 |
| lineage2.2.1.1 | 8 |
| lineage2.2.1 | 35 |
| lineage1.1.3.1 | 7 |
| lineage4.8 | 19 |
| lineage2.2.1;lineage4.8 | 2 |
| lineage4.5 | 2 |
| lineage2.2.1;lineage4.3.2.1 | 2 |
| lineage1.2.1.2.1 | 1 |
| lineage2.2.1.2 | 2 |
| lineage2.2.1;lineage4.4.2 | 1 |
| lineage3.1.2 | 2 |
| lineage2.2.2 | 1 |
| lineage4.8.1 | 1 |
| lineage4.1.1.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 130 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR28394188 | MDR-TB | lineage4.3.3 | None | ERR1034614 | Pre-XDR-TB | lineage3 | pk | ERR2707020 | MDR-TB | lineage4.6.1.2 | cd | ERR046825 | RR-TB | lineage4.1.1.1 | gb | ERR4828974 | Pre-XDR-TB | lineage4.9 | it | ERR751527 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR4829392 | Pre-XDR-TB | lineage4.9 | it | ERR8665537 | Pre-XDR-TB | lineage4.3.3 | None | ERR1199105 | MDR-TB | lineage4.6.1.2 | cd | ERR2517125 | MDR-TB | lineage2.2.1.1 | gb | ERR2516496 | MDR-TB | lineage4.3.3 | pe | SRR5837710 | Pre-XDR-TB | lineage2.2.1.1 | th | SRR5341391 | HR-TB | lineage3 | in | SRR5341327 | HR-TB | lineage3 | in | SRR10828189 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR789236 | XDR-TB | lineage2.2.1 | None | SRR1163293 | MDR-TB | lineage1.1.3.1 | None | SRR25389553 | MDR-TB | lineage2.2.1.1 | None | ERR789237 | Pre-XDR-TB | lineage2.2.1 | None | ERR789235 | XDR-TB | lineage2.2.1 | None | ERR4796360 | XDR-TB | lineage2.2.1 | in | ERR4796773 | Pre-XDR-TB | lineage2.2.1 | in | ERR2516206 | Pre-XDR-TB | lineage4.3.3 | be | ERR551888 | HR-TB | lineage4.8 | None | ERR978256 | XDR-TB | lineage2.2.1 | None | SRR1146286 | MDR-TB | lineage1.1.3.1 | None | ERR4822586 | Pre-XDR-TB | lineage2.2.1;lineage4.8 | tm | SRR3105788 | MDR-TB | lineage2.2.1.1 | None | ERR3132175 | Pre-XDR-TB | lineage2.2.1 | None | SRR16058058 | MDR-TB | lineage4.5 | None | ERR552970_ERR552971 | MDR-TB | lineage4.8 | None | ERR551887_ERR551888 | MDR-TB | lineage4.8 | None | ERR8773611 | MDR-TB | lineage2.2.1 | None | SRR25206892 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR28045923 | Pre-XDR-TB | lineage2.2.1 | None | SRR7517690 | XDR-TB | lineage2.2.1 | None | ERR978257 | Pre-XDR-TB | lineage2.2.1 | None | SRR29231826 | MDR-TB | lineage4.6.1.2 | None | ERR688046 | Pre-XDR-TB | lineage3 | None | SRR10303343 | MDR-TB | lineage2.2.1;lineage4.3.2.1 | None | ERR3132179 | Pre-XDR-TB | lineage2.2.1 | None | ERR8773609 | MDR-TB | lineage2.2.1 | None | ERR552971 | MDR-TB | lineage4.8 | None | ERR789234 | XDR-TB | lineage2.2.1 | None | SRR29231685 | MDR-TB | lineage4.6.1.2 | None | ERR13291535 | MDR-TB | lineage2.2.1 | None | SRR29772488 | MDR-TB | lineage3 | None | SRR21747027 | Pre-XDR-TB | lineage2.2.1 | None | ERR13276309 | Pre-XDR-TB | lineage2.2.1 | None | SRR10430396 | MDR-TB | lineage2.2.1;lineage4.3.2.1 | None | ERR13290787 | Pre-XDR-TB | lineage2.2.1 | None | ERR551129 | MDR-TB | lineage4.8 | None | ERR13291071 | MDR-TB | lineage1.2.1.2.1 | None | ERR270672 | HR-TB | lineage4.1.2.1 | None | SRR21685367 | MDR-TB | lineage2.2.1 | None | ERR7764346 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR6831902 | Pre-XDR-TB | lineage2.2.1 | None | ERR13250071 | Pre-XDR-TB | lineage4.3.3 | None | SRR13180240 | MDR-TB | lineage2.2.1 | None | ERR2513784 | HR-TB | lineage4.1.2.1 | gb | ERR4797961 | Pre-XDR-TB | lineage2.2.1 | in | ERR551128_ERR551129 | MDR-TB | lineage4.8 | None | ERR4797228 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797726 | MDR-TB | lineage3 | in | ERR4800718 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4800371 | MDR-TB | lineage2.2.1.1 | in | SRR17657952 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093117 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800319 | MDR-TB | lineage4.8 | in | SAMN02414928 | MDR-TB | lineage1.1.3.1 | se | ERR3287451 | MDR-TB | lineage4.3.3 | pe | ERR751383 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR4822594 | Pre-XDR-TB | lineage2.2.1;lineage4.8 | tm | ERR2707026 | MDR-TB | lineage4.6.1.2 | cd | ERR8665868 | Pre-XDR-TB | lineage4.3.3 | None | ERR2707024 | MDR-TB | lineage4.6.1.2 | cd | SAMEA2533722 | MDR-TB | lineage4.8 | uz | SAMEA2534200 | MDR-TB | lineage4.8 | uz | SAMEA2534268 | MDR-TB | lineage4.8 | uz | SAMEA2535039 | MDR-TB | lineage4.8 | uz | ERR552970 | MDR-TB | lineage4.8 | None | SRR20969477 | Pre-XDR-TB | lineage2.2.1;lineage4.4.2 | None | SRR29772672 | MDR-TB | lineage2.2.1.1 | None | ERR551128 | MDR-TB | lineage4.8 | None | SRR1144834 | MDR-TB | lineage1.1.3.1 | None | SRR15901692 | Pre-XDR-TB | lineage4.9 | None | ERR4797772 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799874 | Pre-XDR-TB | lineage3.1.2 | in | ERR9125330 | MDR-TB | lineage4.5 | None | ERR5865942 | MDR-TB | lineage4.8 | None | SRR28394246 | MDR-TB | lineage4.3.3 | None | SRR17658004 | Pre-XDR-TB | lineage2.2.1 | None | ERR1654669 | MDR-TB | lineage4.6.1.2 | None | SRR16088226 | HR-TB | lineage4.8 | None | SRR12420476 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813131 | Pre-XDR-TB | lineage2.2.1 | None | ERR4827753 | MDR-TB | lineage2.2.1 | None | ERR11081565 | Pre-XDR-TB | lineage2.2.1 | None | ERR270704 | HR-TB | lineage4.1.2.1 | None | SRR29093109 | Pre-XDR-TB | lineage2.2.2 | None | ERR789239 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488469 | XDR-TB | lineage4.8.1 | None | ERR551797 | MDR-TB | lineage4.8 | None | SRR21887646 | MDR-TB | lineage2.2.1 | None | ERR13290483 | MDR-TB | lineage1.1.3.1 | None | ERR4796544 | Pre-XDR-TB | lineage3 | in | ERR4827754 | MDR-TB | lineage2.2.1 | None | ERR13290482 | MDR-TB | lineage1.1.3.1 | None | SRR1163305 | MDR-TB | lineage1.1.3.1 | None | ERR551798_ERR551797 | MDR-TB | lineage4.8 | None | SRR29230786 | MDR-TB | lineage4.6.1.2 | None | ERR551798 | MDR-TB | lineage4.8 | None | ERR789238 | XDR-TB | lineage2.2.1 | None | ERR4797938 | HR-TB | lineage3 | in | ERR4800344 | Pre-XDR-TB | lineage3.1.2 | in | SRR15901690 | Pre-XDR-TB | lineage4.9 | None | ERR14047576 | XDR-TB | lineage4.9 | None | ERR14047578 | XDR-TB | lineage4.9 | None | ERR14694009 | Pre-XDR-TB | lineage4.9 | None | ERR14694010 | XDR-TB | lineage4.9 | None | ERR14721720 | Pre-XDR-TB | lineage4.9 | None | ERR14708080 | Pre-XDR-TB | lineage4.9 | None | ERR14708079 | Pre-XDR-TB | lineage4.9 | None | ERR14721719 | Pre-XDR-TB | lineage4.9 | None | ERR14708078 | Pre-XDR-TB | lineage4.9 | None | ERR14708082 | Pre-XDR-TB | lineage4.9 | None | ERR14708081 | Pre-XDR-TB | lineage4.9 | None | ERR14748650 | XDR-TB | lineage4.9 | None | ERR551887 | HR-TB | lineage4.8 | None | SRR11444106 | HR-TB | lineage4.1.1.3 | None |
|---|
