Rv3854c - c.1054delG
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
4 RR-TB
11 HR-TB
74 MDR-TB
71 Pre-XDR-TB
6 XDR-TB
9 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 16 |
| lineage2.2.2 | 27 |
| lineage2.2 | 12 |
| lineage4.2.2 | 4 |
| lineage4.2.2.2 | 23 |
| lineage2.1 | 4 |
| lineage2.2.1 | 35 |
| lineage4.4.1.1 | 6 |
| lineage4.1.3 | 4 |
| lineage1.1.2 | 5 |
| lineage5.1.1 | 3 |
| lineage4.4.1.2 | 4 |
| lineage3 | 10 |
| lineage2.2.1.2 | 2 |
| lineage4.1.1.3;lineage4.1.2.1 | 1 |
| lineage1.1.3.2 | 4 |
| lineage2.2.1.1 | 4 |
| La1.8.1 | 1 |
| lineage1.1.1 | 2 |
| lineage4.3.3 | 1 |
| lineage4.8 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4.2.1 | 1 |
| lineage3.1.2 | 1 |
| lineage4.2.2.1 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage1.2.2;lineage3.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 175 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR7975685 | MDR-TB | lineage4.1.2.1 | None | SRR29017395 | MDR-TB | lineage2.2.2 | None | SRR29017383 | MDR-TB | lineage2.2.2 | None | ERR4553893 | Pre-XDR-TB | lineage2.2 | None | ERR7975637 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4553534 | MDR-TB | lineage2.2.2 | None | SRR22048452 | HR-TB | lineage4.1.2.1 | None | SRR24827283 | Pre-XDR-TB | lineage4.2.2 | None | ERR2517569 | MDR-TB | lineage4.2.2.2 | nl | DRR130141 | Pre-XDR-TB | lineage2.1 | None | ERR13258445 | Pre-XDR-TB | lineage2.1 | None | SRR1167151 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR8348431 | MDR-TB | lineage2.2.1 | None | SRR1162897 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR11662343 | MDR-TB | lineage2.2.1 | None | ERR4553944 | MDR-TB | lineage2.2.2 | None | ERR4553774 | Pre-XDR-TB | lineage2.2 | None | ERR11050166 | Other | lineage4.4.1.1 | None | SRR22175203 | Pre-XDR-TB | lineage2.2.1 | None | SRR998843 | MDR-TB | lineage4.1.3 | None | ERR4553600 | MDR-TB | lineage1.1.2 | None | SRR12199383 | Other | lineage1.1.2 | None | ERR751330 | MDR-TB | lineage5.1.1 | None | ERR7975647 | MDR-TB | lineage4.1.2.1 | None | ERR13243549 | Pre-XDR-TB | lineage2.2.1 | None | SRR18911561 | Pre-XDR-TB | lineage4.2.2 | None | ERR4553825 | MDR-TB | lineage2.2 | None | ERR13285133 | MDR-TB | lineage2.2.1 | None | SRR25827764 | Pre-XDR-TB | lineage2.2.1 | None | ERR4423623 | MDR-TB | lineage4.4.1.2 | None | SRR6832694 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267672 | MDR-TB | lineage3 | None | SRR29017142 | MDR-TB | lineage2.2.2 | None | ERR4799416 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800228 | Pre-XDR-TB | lineage3 | in | ERR4796702 | Pre-XDR-TB | lineage2.2.1 | in | ERR4553603 | MDR-TB | lineage2.2 | None | ERR4800061 | Pre-XDR-TB | lineage2.2.1.2 | in | ERR11488791 | MDR-TB | lineage4.4.1.1 | None | SRR29017439 | MDR-TB | lineage2.2.2 | None | SRR671865 | Pre-XDR-TB | lineage2.2.1 | cn | SRR671863 | Pre-XDR-TB | lineage2.2.1 | cn | SRR671864 | Pre-XDR-TB | lineage2.2.1 | cn | SRR28394219 | MDR-TB | lineage4.1.1.3;lineage4.1.2.1 | None | ERR4830830 | Pre-XDR-TB | lineage4.2.2.2 | et | ERR4810976 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4829954 | Pre-XDR-TB | lineage1.1.2 | None | SRR2099964 | HR-TB | lineage1.1.3.2 | None | SRR2100196 | HR-TB | lineage1.1.3.2 | None | ERR718193 | MDR-TB | lineage2.2.1 | th | ERR702432 | MDR-TB | lineage5.1.1 | gh | ERR2677422 | MDR-TB | lineage3 | de | ERR2513218 | HR-TB | lineage2.2.1.2 | gb | SRR5709873 | MDR-TB | lineage2.2.1 | th | ERR4553889 | Pre-XDR-TB | lineage2.2 | None | ERR1035067 | RR-TB | lineage2.2.1.1 | za | SRR11567804 | XDR-TB | lineage2.2.2 | None | ERR11043035 | Other | lineage4.4.1.1 | None | SRR4423174 | Pre-XDR-TB | lineage2.2.2 | None | SRR998841 | MDR-TB | lineage4.1.3 | None | ERR11043526 | MDR-TB | lineage2.2.1 | None | SRR8600253 | Other | La1.8.1 | None | SRR1165366 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR8774238 | MDR-TB | lineage4.4.1.2 | None | ERR11043677 | MDR-TB | lineage3 | None | ERR4827585 | Pre-XDR-TB | lineage2.2.1 | None | ERR7975679 | MDR-TB | lineage4.1.2.1 | None | SRR29096626 | MDR-TB | lineage4.2.2.2 | None | ERR4553579 | MDR-TB | lineage2.2.2 | None | ERR2446183 | MDR-TB | lineage4.2.2.2 | nl | SRR17729370 | Other | lineage1.1.1 | None | ERR13290777 | Pre-XDR-TB | lineage2.1 | None | ERR2181457 | MDR-TB | lineage5.1.1 | gh | SRR29096523 | MDR-TB | lineage4.2.2.2 | None | SRR16115071 | Pre-XDR-TB | lineage4.2.2 | None | ERR3014623 | Pre-XDR-TB | lineage4.1.2.1 | tn | ERR2653151 | HR-TB | lineage4.3.3 | None | SRR25827372 | Pre-XDR-TB | lineage3 | None | ERR13290601 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR4553578 | MDR-TB | lineage2.2.2 | None | SRR29017417 | MDR-TB | lineage2.2.2 | None | SRR29772645 | RR-TB | lineage3 | None | ERR117627 | HR-TB | lineage1.1.3.2 | None | SRR29017123 | Pre-XDR-TB | lineage2.2.2 | None | SRR29017656 | MDR-TB | lineage2.2.2 | None | SRR21798494 | HR-TB | lineage4.1.2.1 | None | SRR29017708 | MDR-TB | lineage2.2.2 | None | SRR29274018 | MDR-TB | lineage4.8 | None | ERR7975635 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13284493 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR23310988 | MDR-TB | lineage4.2.1.1 | None | ERR11068707 | Other | lineage4.1.2.1 | None | SRR29017408 | MDR-TB | lineage2.2.2 | None | SRR998844 | MDR-TB | lineage4.1.3 | None | ERR7975633 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR7975658 | MDR-TB | lineage4.1.2.1 | None | ERR3335769 | Pre-XDR-TB | lineage3 | pk | SRR25207241 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797735 | Pre-XDR-TB | lineage2.2.1 | in | SRR29017096 | MDR-TB | lineage2.2.2 | None | SRR29016818 | Pre-XDR-TB | lineage2.2.2 | None | ERR4822352 | Pre-XDR-TB | lineage2.1 | None | SRR29772556 | Pre-XDR-TB | lineage2.2.1 | None | ERR4829384 | Pre-XDR-TB | lineage2.2.1 | it | ERR13290598 | Pre-XDR-TB | lineage4.2.2.2 | None | SAMN02414970 | Pre-XDR-TB | lineage4.2.2.2 | se | SRR671789 | Pre-XDR-TB | lineage2.2.1 | cn | SRR29017639 | MDR-TB | lineage2.2.2 | None | SRR8380939 | Pre-XDR-TB | lineage2.2.1 | in | SRR8651558 | XDR-TB | lineage2.2.2 | cn | ERR5866450 | Pre-XDR-TB | lineage2.2.1 | None | ERR8774569 | Pre-XDR-TB | lineage2.2.1 | None | SRR28393567 | MDR-TB | lineage4.1.2.1 | None | ERR718325 | HR-TB | lineage2.2.1 | th | SRR28706565 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911288 | MDR-TB | lineage2.2.1 | vn | ERR2707003 | MDR-TB | lineage4.4.1.2 | cd | ERR4830611 | Pre-XDR-TB | lineage4.2.1 | tm | ERR4830799 | MDR-TB | lineage4.2.2.2 | et | ERR4830952 | Pre-XDR-TB | lineage2.2.1 | np | ERR3077975 | MDR-TB | lineage3 | None | ERR4553725 | MDR-TB | lineage2.2 | None | SRR29017667 | MDR-TB | lineage1.1.2 | None | SRR29231761 | MDR-TB | lineage4.4.1.2 | None | ERR1213887 | Pre-XDR-TB | lineage2.2.1.1 | np | ERR11488861 | XDR-TB | lineage4.4.1.1 | None | ERR4799587 | XDR-TB | lineage3.1.2 | in | SRR1166935 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR4553904 | Pre-XDR-TB | lineage2.2 | None | ERR2516575 | MDR-TB | lineage4.2.2.1 | None | ERR11488900 | XDR-TB | lineage4.4.1.1 | None | ERR4553664 | MDR-TB | lineage2.2 | None | ERR4553630 | MDR-TB | lineage2.2 | None | ERR13292315 | Pre-XDR-TB | lineage4.2.2 | None | SRR29017151 | MDR-TB | lineage2.2.2 | None | ERR2020088 | Pre-XDR-TB | lineage2.2.1;lineage4 | None | ERR4553702 | MDR-TB | lineage2.2 | None | ERR3275336 | MDR-TB | lineage4.2.2.2 | nl | SRR29017689 | MDR-TB | lineage2.2.2 | None | SRR29341539 | Pre-XDR-TB | lineage2.2.2 | None | SRR21747011 | RR-TB | lineage2.2.2 | None | ERR4553816 | MDR-TB | lineage2.2 | None | SRR17729382 | Other | lineage1.1.1 | None | SRR29772701 | RR-TB | lineage3 | None | ERR4553662 | MDR-TB | lineage2.2 | None | SRR25827616 | Pre-XDR-TB | lineage3 | None | SRR7645896 | HR-TB | lineage2.2.1 | None | SRR30180199 | MDR-TB | lineage2.2.1 | None | ERR7737624 | MDR-TB | lineage4.2.2.2 | None | SRR11972358 | Other | lineage1.2.2;lineage3.1.2 | None | SRR29016888 | MDR-TB | lineage2.2.2 | None | ERR11043899 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR270671 | HR-TB | lineage1.1.3.2 | None | ERR13290599 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR4796525 | Pre-XDR-TB | lineage2.2.1 | in | SRR29017176 | MDR-TB | lineage2.2.2 | None | ERR4553939 | MDR-TB | lineage2.2.2 | None | SRR29016967 | Pre-XDR-TB | lineage2.2.2 | None | ERR7975632 | MDR-TB | lineage4.1.2.1 | None | ERR13290600 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR998842 | MDR-TB | lineage4.1.3 | None | SRR5153597 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798155 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4819916 | HR-TB | lineage1.1.2 | gb | ERR4830805 | MDR-TB | lineage4.2.2.2 | et | ERR4830822 | Pre-XDR-TB | lineage4.2.2.2 | et | ERR4830954 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830803 | Pre-XDR-TB | lineage4.2.2.2 | et | ERR4830845 | MDR-TB | lineage4.2.2.2 | et | ERR5866449 | Pre-XDR-TB | lineage2.2.1 | None | ERR4011971 | MDR-TB | lineage4.2.2.2 | None | ERR7737654 | MDR-TB | lineage4.2.2.2 | None | ERR3132127 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR4816691 | Other | lineage4.1.2.1 | gb | ERR11488941 | XDR-TB | lineage4.4.1.1 | None |
|---|
