SRR1181122
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1181310
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11871412
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11871414
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11871411
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11871415
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11871418
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11871417
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11871410
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11871421
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11871420
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11871425
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11871424
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11871422
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11871427
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR11871423
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR11871426
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11871428
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11871433
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11871435
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11871431
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11871429
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11871438
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11871446
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11871430
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11871437
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11871436
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR11871444
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11871445
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11871440
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR11871441
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662181
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11871447
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR11871442
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11871443
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13120440
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13120445
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13120446
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13120439
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232670
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13120441
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13120450
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13120452
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232399
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232415
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232535
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232542
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232648
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232669
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232504
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232592
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232667
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232673
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232685
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232676
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232683
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232687
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232696
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232694
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232689
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232731
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232709
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232733
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232732
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14781961
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14781946
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232773
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13243564
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11067651
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782037
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782096
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782176
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782588
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782455
|
HR-TB
|
lineage2.2.1
|
None
|
SRR14782480
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801591
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782743
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801330
|
MDR-TB
|
lineage4;lineage2.2.1
|
None
|
SRR14801439
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801500
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801507
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782686
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801314
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801504
|
MDR-TB
|
lineage4.2.1;lineage2.2.1
|
None
|
SRR14801593
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801603
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR14801608
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801607
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801604
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801888
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801616
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801612
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801641
|
HR-TB
|
lineage2.2.1
|
None
|
SRR14801717
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801880
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801935
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801924
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801927
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801936
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801943
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801960
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801969
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801956
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801946
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801964
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801977
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801999
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801979
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801978
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801987
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802004
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802031
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802021
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802059
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802027
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802060
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802081
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802063
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802071
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802062
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802073
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802088
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802097
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802087
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802100
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802086
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802099
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802101
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802098
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802119
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802116
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802109
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802121
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802115
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802134
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802123
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802125
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802129
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802151
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802152
|
MDR-TB
|
lineage4.8;lineage4.3.3;lineage2.2.1
|
None
|
SRR14802133
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802154
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802156
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802164
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802262
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807456
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802277
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807457
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807541
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807460
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807473
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807494
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807459
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807481
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR14807556
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807538
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807546
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807571
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807549
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807565
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807577
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807569
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807584
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807578
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807573
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807580
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807594
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807579
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR14807610
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR14807603
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807611
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807636
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807632
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807639
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807642
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807659
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807648
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807657
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807658
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807678
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807668
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807661
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807683
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR14807680
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807682
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807688
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807684
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15722998
|
Pre-XDR-TB
|
lineage4.2.2
|
None
|
SRR15901698
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16088528
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR16087914
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16088426
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16370525
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16370521
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18714848
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR17040823
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16370531
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR17040824
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR17040825
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256024
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715014
|
HR-TB
|
lineage2.2.1
|
None
|
SRR18714932
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18714927
|
MDR-TB
|
lineage4;lineage2.2.1
|
None
|
SRR18714990
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18715165
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715204
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715180
|
HR-TB
|
lineage2.2.1
|
None
|
SRR18715392
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18715233
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715308
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18715357
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715389
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18715275
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715359
|
MDR-TB
|
lineage4.8;lineage2.2.1
|
None
|
SRR18715385
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24710237
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715402
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18911463
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25389506
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR22351862
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827629
|
Pre-XDR-TB
|
lineage3;lineage2.2.1;lineage1.1.3.3
|
None
|
SRR25389510
|
HR-TB
|
lineage2.2.2
|
None
|
SRR21747024
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR22424939
|
Pre-XDR-TB
|
lineage1.1.3.2
|
None
|
SRR22757409
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22757403
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22757400
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11067955
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22757399
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22757401
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11067750
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22757405
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22757407
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11068071
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11068190
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11068535
|
Pre-XDR-TB
|
lineage4.2.1.1;lineage2.2
|
None
|
ERR11068617
|
HR-TB
|
lineage2.2.1
|
None
|
ERR11068626
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11068627
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11081802
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11081294
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11081426
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11081756
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11080845
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11081232
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11081512
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082190
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11081824
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082281
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11243550
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23861900
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23938601
|
HR-TB
|
lineage2.2.1
|
None
|
ERR11082658
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23862043
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11243552
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24255975
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21887781
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR27107249
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24710188
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25206976
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24256061
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256270
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR27107262
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR27107292
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25206979
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207319
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR27107254
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR27107263
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR25389508
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR24255944
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25389507
|
Pre-XDR-TB
|
lineage2.2.2;lineage2.2.1
|
None
|
SRR25389509
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR24256054
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24710113
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256196
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28240104
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25206883
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24710134
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28239878
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24255955
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24222957
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24256142
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR553237
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2041783
|
Pre-XDR-TB
|
lineage2.2.1
|
rs
|
ERR551212
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR3085253
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3085264
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3085292
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3086365
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3086373
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5709907
|
MDR-TB
|
lineage2.2.1
|
th
|
ERR552136
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR3085290
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3085302
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2041744
|
MDR-TB
|
lineage2.2.1
|
rs
|
ERR2041742
|
MDR-TB
|
lineage2.2.1
|
rs
|
ERR2041781
|
MDR-TB
|
lineage2.2.1
|
rs
|
SRR8237403
|
MDR-TB
|
lineage2.2.1
|
us
|
SAMN02419579
|
MDR-TB
|
lineage2.2.1
|
by
|
ERR027447
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR3743375
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1036287
|
MDR-TB
|
lineage2.2.1
|
pt
|
SRR3743490
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419634
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR6256989
|
MDR-TB
|
lineage2.2.1
|
ru
|
SAMN02419611
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR6257011
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
SRR6257027
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR3275447
|
MDR-TB
|
lineage2.2.1
|
nl
|
SRR6257013
|
HR-TB
|
lineage2.2.1
|
ru
|
ERR133936
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR234632
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR4035705
|
Other
|
lineage4.1.2
|
None
|
ERR137259
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR234650
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR234566
|
MDR-TB
|
lineage4.8;lineage2.2.1
|
None
|
ERR067598
|
MDR-TB
|
lineage2.2.1
|
ru
|
SAMEA2534333
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2534128
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR108477
|
MDR-TB
|
lineage2.2.1
|
ru
|
SAMEA2534150
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR5152912
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5152953
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153321
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153264
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153273
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534634
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2534582
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR5153612
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5153616
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153336
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534696
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2534699
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR552580
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2534780
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2535113
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2534859
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR5153886
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153905
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153721
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153828
|
MDR-TB
|
lineage4.2.1;lineage2.2.1
|
None
|
SAMN02414878
|
MDR-TB
|
lineage2.2.1
|
se
|
SAMEA2535195
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR7911720
|
MDR-TB
|
lineage2.2.1
|
us
|
ERR7911423
|
MDR-TB
|
lineage2.2.1
|
us
|
ERR7911421
|
Pre-XDR-TB
|
lineage2.2.1
|
us
|
ERR7911744
|
Pre-XDR-TB
|
lineage2.2.1
|
us
|
SAMEA2535218
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR7911724
|
MDR-TB
|
lineage2.2.1
|
us
|
ERR7911741
|
MDR-TB
|
lineage2.2.1
|
us
|
ERR7911745
|
MDR-TB
|
lineage2.2.1
|
us
|
SAMN02414947
|
MDR-TB
|
lineage2.2.1
|
se
|
ERR7911044
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR7910956
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR7910979
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR7910960
|
MDR-TB
|
lineage2.2.1
|
md
|
SAMN02414942
|
MDR-TB
|
lineage2.2.1
|
se
|
SAMEA2533389
|
Pre-XDR-TB
|
lineage2.2.1
|
uz
|
SAMN02584652
|
MDR-TB
|
lineage2.2.1
|
md
|
SAMEA2533485
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR2707099
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
SAMEA2533463
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2533670
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR2706920
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
SAMEA2533701
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR2707142
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
SAMEA2534012
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2533795
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2706993
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
SAMEA2534056
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2534091
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2534076
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR2677403
|
MDR-TB
|
lineage2.2.1
|
de
|
ERR4822285
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR2677396
|
Pre-XDR-TB
|
lineage4.1.2.1
|
de
|
SAMEA2534656
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR2677427
|
MDR-TB
|
lineage2.2.1
|
de
|
ERR4827584
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2653126
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR5486894
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR5535711
|
HR-TB
|
lineage4.1.2.1
|
None
|
ERR4827680
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533932
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR551253
|
MDR-TB
|
lineage4.6.1.2
|
cg
|
ERR4827599
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827602
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5266549
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR5266546
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR5266542
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR2677412
|
MDR-TB
|
lineage2.2.1
|
de
|
ERR4828017
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2446459
|
MDR-TB
|
lineage2.2.1
|
nl
|
ERR4827703
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR108421
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR4828013
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827989
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR234668
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR137282
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR067696
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR117454
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR228006
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR137271
|
MDR-TB
|
lineage4.2.1;lineage2.2.1
|
ru
|
ERR228028
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR2677454
|
MDR-TB
|
lineage2.2.1
|
de
|
ERR144581
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR229995
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR4827914
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR133899
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR144570
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR234607
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR228037
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR4827991
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR067584
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR230007
|
HR-TB
|
lineage2.2.1
|
ru
|
ERR227976
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR133982
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR4828025
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR228039
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR4828024
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR137255
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR4827428
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR117463
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR067674
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR4827438
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR108499
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR108514
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR4827763
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827929
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827483
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827930
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827459
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827931
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828003
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827941
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827805
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827813
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4822283
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827833
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827956
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2677457
|
MDR-TB
|
lineage2.2.1
|
de
|
ERR4827553
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827563
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2677455
|
Pre-XDR-TB
|
lineage4.1.2.1;lineage2.2.1
|
de
|
ERR4827841
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02628505
|
Pre-XDR-TB
|
lineage2.2.1
|
ir
|
SAMN02628504
|
Pre-XDR-TB
|
lineage2.2.1
|
ir
|
ERR2516910
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR4798941
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830112
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2516320
|
MDR-TB
|
lineage2.2.1
|
be
|
ERR4830037
|
MDR-TB
|
lineage2.2.1
|
tj
|
ERR4830107
|
MDR-TB
|
lineage2.2.1
|
tj
|
ERR4830176
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516263
|
MDR-TB
|
lineage2.2.1
|
be
|
ERR2516373
|
MDR-TB
|
lineage2.2.1
|
be
|
ERR4822390
|
Pre-XDR-TB
|
lineage2.2.1
|
kg
|
ERR2516804
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR4830070
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4828058
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4822556
|
Pre-XDR-TB
|
lineage2.2.1
|
ua
|
ERR4822401
|
Pre-XDR-TB
|
lineage2.2.1
|
ua
|
ERR4828026
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828052
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828056
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4828067
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828063
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828076
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828098
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4828083
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828107
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828112
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4828105
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828104
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2517548
|
MDR-TB
|
lineage2.2.1
|
nl
|
ERR4828129
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828127
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828138
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830021
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830033
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830127
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830571
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6353888
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6353885
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6458386
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4810929
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR6353883
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6356952
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6356967
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6356951
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6356977
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6356987
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6485066
|
HR-TB
|
lineage2.2.1
|
None
|
SRR6384963
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6356990
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8651571
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4811505
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR4811475
|
HR-TB
|
lineage2.2.1
|
cn
|
SRR6256994
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6257010
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6257014
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6257017
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6257019
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6257015
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6257026
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6484913
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6257047
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6257049
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6257044
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6257046
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6257058
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6257052
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6257098
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6257070
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6831801
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830983
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4799418
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR2510727
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
ERR4822337
|
Pre-XDR-TB
|
lineage2.2.1
|
de
|
ERR2510710
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
ERR2510862
|
MDR-TB
|
lineage2.2.1
|
it
|
ERR4829010
|
MDR-TB
|
lineage2.2.1
|
it
|
ERR4829118
|
MDR-TB
|
lineage2.2.1
|
it
|
SRR6831785
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872269
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4872290
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5917697
|
MDR-TB
|
lineage2.2.1
|
by
|
ERR4872261
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872284
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872322
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872314
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5917700
|
MDR-TB
|
lineage2.2.1
|
by
|
ERR4872332
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872337
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6831849
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872338
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872345
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872347
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872350
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6831895
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832100
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6831901
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6832028
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6831974
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6832025
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6914121
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6785278
|
HR-TB
|
lineage2.2.1
|
None
|
SRR6785379
|
HR-TB
|
lineage2.2
|
None
|
SRR6785472
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6785511
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832411
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832477
|
HR-TB
|
lineage2.2.1
|
None
|
SRR6785285
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6785386
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832341
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832569
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6914122
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832571
|
HR-TB
|
lineage2.2.1
|
None
|
SRR6832579
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6807682
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832729
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813173
|
Pre-XDR-TB
|
lineage2.2.1
|
pe
|
SRR6807686
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6807701
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6831719
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3287493
|
Pre-XDR-TB
|
lineage2.2.1
|
pe
|
ERR4830770
|
MDR-TB
|
lineage2.2.1
|
ir
|
ERR4829933
|
MDR-TB
|
lineage2.2.1
|
pk
|
SRR6831753
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6831770
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510686
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
ERR2510703
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
ERR2510690
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
ERR2510702
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
ERR11798546
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510709
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
ERR4872355
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510723
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
ERR4829395
|
HR-TB
|
lineage2.2.1
|
it
|
ERR11798549
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7516292
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7516288
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7516298
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8305671
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8305673
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8329333
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7516336
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7516314
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8335026
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8305672
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7517688
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7516391
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7516455
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8357275
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8353479
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8346061
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8345980
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8363334
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8374277
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8365894
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8365903
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8369249
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8439237
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7517818
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8434867
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8377831
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8434639
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7645826
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8433589
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7645860
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8847010
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7646020
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7655981
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8847014
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7781512
|
MDR-TB
|
lineage2.2.1
|
None
|
DRR029663
|
Other
|
lineage2.2.1
|
None
|
SRR7829576
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798548
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798538
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10465821
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798547
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798551
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798540
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10680124
|
MDR-TB
|
lineage6.3.3
|
None
|
ERR10762235
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10680131
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748540
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR10748216
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR10762233
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762294
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762288
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762455
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762311
|
Pre-XDR-TB
|
lineage4.2.1;lineage2.2.1
|
None
|
ERR10762463
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11043890
|
Pre-XDR-TB
|
lineage4.1.2.1;lineage2.2.1
|
None
|
ERR10762468
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762469
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762483
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10867699
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10877874
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11043144
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR11043191
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11043260
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11043518
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11043520
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11043602
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11043735
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR10762456
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762492
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762495
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10877879
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11044928
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11043996
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11044133
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3639695
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1161621
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3287804
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR3639705
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3794440
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3639739
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3794398
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3794446
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3794441
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3794535
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3794483
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR403276
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3794533
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4024807
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR403318
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR403302
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR403306
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4276855
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4276872
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4276865
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11489021
|
MDR-TB
|
lineage1.1.3.2
|
None
|
ERR4797261
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR137240
|
HR-TB
|
lineage2.2.1
|
ru
|
ERR137242
|
HR-TB
|
lineage2.2.1
|
ru
|
ERR108447
|
HR-TB
|
lineage2.2.1
|
ru
|
ERR4831827
|
MDR-TB
|
lineage2.2.1;lineage1.1.1.1
|
vn
|
ERR4828857
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR11798543
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798550
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16088062
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831257
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798539
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830623
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828829
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828917
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16088126
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4828924
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR12311972
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665960
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665913
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665956
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088134
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665957
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665961
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665985
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665982
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088195
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665523
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665986
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16087942
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16087951
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665850
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665813
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665840
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665870
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088323
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665573
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665536
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665611
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665893
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665876
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4812267
|
RR-TB
|
lineage4.9
|
None
|
SRR16088018
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864072
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864073
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864371
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864071
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864074
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864075
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864366
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864367
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864368
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864382
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864370
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864369
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864386
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864372
|
Pre-XDR-TB
|
lineage2.2
|
None
|
ERR5864381
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864389
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864388
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864384
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864383
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864385
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864387
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864591
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864391
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864390
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864593
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864590
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864592
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864597
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864595
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864594
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864600
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864596
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864604
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864599
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864605
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864603
|
MDR-TB
|
lineage2.2
|
None
|
ERR5864601
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864598
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864836
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864602
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864837
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864839
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865036
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864838
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865034
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865033
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864840
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865052
|
MDR-TB
|
lineage2.2
|
None
|
ERR5865051
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865035
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865053
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865050
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865148
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865147
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865149
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865146
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865171
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865170
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865177
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865172
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865178
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865184
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865186
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865187
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865206
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865188
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865185
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865179
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865207
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865209
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865208
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865300
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865367
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865306
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865307
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865301
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865366
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865369
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865383
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865368
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865385
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865384
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865399
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865386
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865397
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865400
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865398
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865523
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865401
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865525
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865518
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865557
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865524
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865519
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865522
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865558
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865578
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865587
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865579
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865586
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865621
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865619
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865618
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865652
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865622
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865651
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865745
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865708
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865707
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865749
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865748
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865762
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865763
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865768
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865851
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865864
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865852
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865863
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865886
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865887
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865918
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865919
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865920
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865917
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865932
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865934
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865933
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865953
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865943
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865978
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865967
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865977
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865951
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865998
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865999
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865990
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866012
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866037
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866013
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866040
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866038
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866039
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866122
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866067
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866115
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866124
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866123
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866066
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866116
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866162
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866160
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866180
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866161
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866181
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866182
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866233
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866232
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866234
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866418
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866419
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866421
|
Pre-XDR-TB
|
lineage2.2
|
None
|
ERR5866423
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866422
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866420
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866438
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866439
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866554
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866505
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866521
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866522
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866504
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866555
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866561
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866562
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16087923
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866579
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866580
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16088579
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR27107242
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6866995
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR16088163
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16088167
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088252
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16088567
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6336802
|
Other
|
lineage1.2.1.2
|
None
|
ERR6865904
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16088031
|
HR-TB
|
lineage2.2.1
|
None
|
SRR16088508
|
HR-TB
|
lineage2.2.1
|
None
|
SRR24256258
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR27107253
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR27107281
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR24255879
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7910941
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7910928
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256160
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7975676
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24255978
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256030
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665502
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665501
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665720
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665542
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662227
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665541
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665721
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665744
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665729
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665728
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665745
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8773873
|
HR-TB
|
lineage2.2.1
|
None
|
ERR8773985
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8773871
|
HR-TB
|
lineage2.2.1
|
None
|
ERR8773984
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8773977
|
HR-TB
|
lineage2.2.1
|
None
|
ERR8774585
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9027245
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16087948
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9027243
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9027246
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9029851
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR10379997
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9119653
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1002690
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10303282
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10303337
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9119656
|
HR-TB
|
lineage2.2.1
|
None
|
SRR10379921
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10379986
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10380111
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10380031
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10380103
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10397228
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10397134
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10397221
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10380131
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10380171
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10397098
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10397179
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10397204
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10397245
|
HR-TB
|
lineage2.2.1
|
None
|
SRR10397225
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10430359
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11033678
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10430390
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11033717
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11033715
|
HR-TB
|
lineage2.2.1
|
None
|
SRR11033736
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11033731
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11033727
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1144755
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1165477
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1159076
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1162700
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163339
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163381
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1146283
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1162483
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1162778
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163021
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163202
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163332
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163392
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1165602
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1165572
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1165543
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169119
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1166118
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1166707
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1168997
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1166927
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169033
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172071
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1173192
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172230
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1173131
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1173793
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1173875
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11786863
|
MDR-TB
|
lineage2.2.1
|
None
|