Rv3854c - c.1242delT


Drug resistance types
0 Sensitive 0 RR-TB 13 HR-TB 46 MDR-TB 66 Pre-XDR-TB 6 XDR-TB 5 Other
lineage Counts
lineage Count
lineage2.2.1 43
lineage5.1.3 1
lineage3 8
lineage4.1.1.3 6
lineage2.2.1.1 36
lineage4.1.2.1 16
lineage4.9 1
lineage3.1.2 2
lineage4.2.1 1
lineage4.2.1.1 1
lineage4.8 9
lineage3.1.2.1 2
lineage4.1.1;lineage2.2.1.1 1
lineage3.1 1
lineage4.4.2 1
lineage2.2 1
lineage1.1.1 1
lineage2.2.2 4
lineage4 1
spoligotype Counts
spoligotype Count
None 136
Geographic prevalence
Country level data for this variant is available for 54 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR5153323 MDR-TB lineage2.2.1 None
ERR11067190 MDR-TB lineage5.1.3 None
SRR5341288 Pre-XDR-TB lineage3 None
ERR1873531 Pre-XDR-TB lineage4.1.1.3 za
SRR5341238 Pre-XDR-TB lineage2.2.1.1 in
ERR2514451 MDR-TB lineage4.1.2.1 gb
SRR5341204 Other lineage4.9 None
ERR2514559 MDR-TB lineage4.1.2.1 gb
ERR2517052 Pre-XDR-TB lineage2.2.1 gb
SRR5486870 MDR-TB lineage4.1.2.1 None
SRR5341305 Pre-XDR-TB lineage3 in
ERR2516740 MDR-TB lineage4.1.2.1 gb
ERR2516856 Pre-XDR-TB lineage2.2.1 gb
ERR4830909 Pre-XDR-TB lineage2.2.1.1 np
ERR270781 HR-TB lineage3.1.2 None
ERR4830930 Pre-XDR-TB lineage2.2.1.1 np
ERR4828788 XDR-TB lineage4.1.2.1 None
SRR6458401 Pre-XDR-TB lineage2.2.1 None
SRR6458423 HR-TB lineage2.2.1 None
SRR9738483 MDR-TB lineage4.1.2.1 None
SRR6832155 HR-TB lineage4.2.1 None
SRR6785398 HR-TB lineage4.2.1.1 None
SRR7341673 HR-TB lineage4.8 ro
ERR4830934 Pre-XDR-TB lineage2.2.1.1 np
ERR4830943 Pre-XDR-TB lineage2.2.1.1 np
SRR7653602 Pre-XDR-TB lineage2.2.1 None
SRR7517732 MDR-TB lineage3.1.2.1 None
SRR7592330 Pre-XDR-TB lineage4.1.2.1 None
SRR7517720 MDR-TB lineage3.1.2.1 None
SRR7592349 MDR-TB lineage4.1.2.1 None
SRR7829582 Pre-XDR-TB lineage4.1.2.1 None
SRR7781508 XDR-TB lineage4.1.2.1 None
ERR046796 Pre-XDR-TB lineage4.8 gb
DRR188926 Other lineage2.2.1 None
ERR046903 Pre-XDR-TB lineage4.8 gb
ERR047891 Pre-XDR-TB lineage4.8 None
ERR046944 Pre-XDR-TB lineage4.8 None
ERR072083 Pre-XDR-TB lineage4.8 None
ERR4796442 Pre-XDR-TB lineage2.2.1.1 in
ERR4796972 Pre-XDR-TB lineage2.2.1.1 in
ERR4796776 Pre-XDR-TB lineage2.2.1.1 in
ERR4797417 Pre-XDR-TB lineage4.1.1;lineage2.2.1.1 in
ERR4797047 Pre-XDR-TB lineage2.2.1.1 in
ERR4797061 Pre-XDR-TB lineage2.2.1.1 in
ERR4797413 Pre-XDR-TB lineage2.2.1.1 in
ERR4797713 HR-TB lineage3 in
ERR4798330 Pre-XDR-TB lineage2.2.1.1 in
ERR4797727 Pre-XDR-TB lineage2.2.1.1 in
ERR4797803 Pre-XDR-TB lineage3.1 in
ERR4797849 XDR-TB lineage2.2.1.1 in
ERR4798240 Pre-XDR-TB lineage2.2.1.1 in
ERR4797865 XDR-TB lineage2.2.1.1 in
ERR4797945 Pre-XDR-TB lineage2.2.1.1 in
ERR4798153 HR-TB lineage3 in
ERR4798254 Pre-XDR-TB lineage2.2.1.1 in
ERR4798305 Pre-XDR-TB lineage2.2.1.1 in
ERR4798416 Pre-XDR-TB lineage2.2.1.1 in
ERR4798392 Pre-XDR-TB lineage4.8 in
ERR4798351 Pre-XDR-TB lineage2.2.1.1 in
ERR4798356 Pre-XDR-TB lineage2.2.1.1 in
ERR4798970 Pre-XDR-TB lineage2.2.1.1 in
ERR4798726 Pre-XDR-TB lineage2.2.1.1 in
ERR4798953 MDR-TB lineage2.2.1.1 in
ERR4799073 Pre-XDR-TB lineage4.8 in
ERR4799657 XDR-TB lineage2.2.1.1 None
ERR4799358 Pre-XDR-TB lineage2.2.1.1 in
ERR4799342 Pre-XDR-TB lineage2.2.1.1 None
ERR4799634 XDR-TB lineage2.2.1.1 in
ERR5864621 MDR-TB lineage2.2.1 None
ERR4800059 Pre-XDR-TB lineage2.2.1.1 in
ERR4810889 Pre-XDR-TB lineage4.4.2 cn
ERR4799730 Pre-XDR-TB lineage2.2.1.1 in
ERR4799853 Pre-XDR-TB lineage2.2.1.1 in
ERR4800098 Pre-XDR-TB lineage2.2.1.1 None
ERR5864620 MDR-TB lineage2.2.1 None
ERR5864618 MDR-TB lineage2.2.1 None
ERR5864619 MDR-TB lineage2.2.1 None
ERR5865538 MDR-TB lineage2.2.1 None
ERR5864624 MDR-TB lineage2.2.1 None
ERR5864622 MDR-TB lineage2.2.1 None
ERR5864625 MDR-TB lineage2.2.1 None
ERR5864623 MDR-TB lineage2.2.1 None
ERR5865534 MDR-TB lineage2.2.1 None
ERR5865535 MDR-TB lineage2.2.1 None
ERR5865668 MDR-TB lineage2.2.1 None
ERR5865667 MDR-TB lineage2.2.1 None
ERR5865972 MDR-TB lineage2.2.1 None
ERR5865885 MDR-TB lineage2.2.1 None
ERR5866241 MDR-TB lineage2.2.1 None
ERR5866368 MDR-TB lineage2.2.1 None
ERR5866366 MDR-TB lineage2.2.1 None
ERR5866242 MDR-TB lineage2.2.1 None
ERR5866243 MDR-TB lineage2.2.1 None
ERR5866353 MDR-TB lineage2.2.1 None
ERR5866378 HR-TB lineage2.2.1 None
ERR5866367 MDR-TB lineage2.2.1 None
ERR5866488 MDR-TB lineage2.2.1 None
ERR5866489 MDR-TB lineage2.2.1 None
ERR5866524 MDR-TB lineage2.2.1 None
ERR5866523 MDR-TB lineage2.2.1 None
SRR1013625 Pre-XDR-TB lineage2.2 None
ERR751803 HR-TB lineage1.1.1 th
SRR1049019 Pre-XDR-TB lineage2.2.2 None
SRR1013626 Pre-XDR-TB lineage2.2.2 None
SRR10397117 MDR-TB lineage2.2.1 None
SRR1049020 Pre-XDR-TB lineage2.2.2 None
SRR11033760 HR-TB lineage2.2.1 None
SRR16156779 Pre-XDR-TB lineage4.1.1.3 None
SRR12882333 Other lineage3 None
SRR15316393 Pre-XDR-TB lineage2.2.1 None
SRR16156780 Pre-XDR-TB lineage4.1.1.3 None
SRR16156795 MDR-TB lineage2.2.1 None
SRR16156791 Pre-XDR-TB lineage4.1.1.3 None
SRR16156787 Pre-XDR-TB lineage2.2.1 None
SRR16156801 MDR-TB lineage2.2.1 None
SRR16156800 Pre-XDR-TB lineage4.1.1.3 None
SRR19304074 HR-TB lineage4.1.2.1 None
SRR19115700 MDR-TB lineage4.1.2.1 None
SRR18715413 MDR-TB lineage2.2.1 None
ERR11082954 MDR-TB lineage4.1.2.1 None
SRR2100881 HR-TB lineage3.1.2 None
SRR22175227 Pre-XDR-TB lineage3 None
SRR2100132 Pre-XDR-TB lineage4.8 None
SRR21240229 Other lineage4.1.2.1 None
ERR11067959 HR-TB lineage2.2.1 None
SRR23862076 MDR-TB lineage2.2.1 None
ERR4816578 Pre-XDR-TB lineage2.2.1.1 gb
ERR4813443 MDR-TB lineage4 None
ERR4815940 Pre-XDR-TB lineage2.2.1.1 None
ERR1873392 Pre-XDR-TB lineage4.1.1.3 None
ERR4816102 Pre-XDR-TB lineage2.2.1.1 None
ERR2199883 Other lineage3 de
ERR2510729 Pre-XDR-TB lineage4.1.2.1 it
ERR2510676 MDR-TB lineage4.1.2.1 it
ERR2510498 Pre-XDR-TB lineage3 pk
SAMN02360593 Pre-XDR-TB lineage2.2.2 kr