Rv3854c - c.1242delT


Drug resistance types
0 Sensitive 0 RR-TB 15 HR-TB 49 MDR-TB 81 Pre-XDR-TB 8 XDR-TB 6 Other
lineage Counts
lineage Count
lineage2.2.1.1 46
lineage2.2.2 5
lineage3 9
lineage4.1.2.1 18
lineage2.2.1 53
lineage4.1.1.3 6
lineage1.1.1 1
lineage4.8 9
lineage4.2.1.1 1
lineage2.2.1.1;lineage3 2
lineage2.2.1.1;lineage4.1.1.1 1
lineage4.2.1 1
lineage4.4.2 2
lineage5.1.3 1
lineage3.1 1
lineage3.1.2.1 1
lineage3.1.2 2
spoligotype Counts
spoligotype Count
None 159
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR4830909 Pre-XDR-TB lineage2.2.1.1 np
SRR1049020 Pre-XDR-TB lineage2.2.2 None
SRR12882333 Other lineage3 None
SRR19304074 HR-TB lineage4.1.2.1 None
DRR474117 Other lineage2.2.1 None
SRR28045972 Pre-XDR-TB lineage2.2.1.1 None
SRR25389454 Pre-XDR-TB lineage2.2.1.1 None
SRR29539800 MDR-TB lineage2.2.1 None
SRR29681468 Pre-XDR-TB lineage2.2.1 None
ERR4800059 Pre-XDR-TB lineage2.2.1.1 in
ERR2510676 MDR-TB lineage4.1.2.1 it
SRR16156779 Pre-XDR-TB lineage4.1.1.3 None
ERR751803 HR-TB lineage1.1.1 th
ERR5865972 MDR-TB lineage2.2.1 None
SRR28859785 HR-TB lineage2.2.1 None
ERR5866366 MDR-TB lineage2.2.1 None
ERR5866378 Pre-XDR-TB lineage2.2.1 None
ERR4815940 Pre-XDR-TB lineage2.2.1.1 None
SRR25827354 Pre-XDR-TB lineage2.2.1.1 None
ERR4798351 Pre-XDR-TB lineage2.2.1.1 in
ERR4799073 Pre-XDR-TB lineage4.8 in
SRR6785398 HR-TB lineage4.2.1.1 None
ERR5866489 MDR-TB lineage2.2.1 None
SRR29772413 Pre-XDR-TB lineage2.2.1 None
ERR5865535 MDR-TB lineage2.2.1 None
SRR7653602 Pre-XDR-TB lineage2.2.1 None
ERR4798416 Pre-XDR-TB lineage2.2.1.1 in
SRR19115700 MDR-TB lineage4.1.2.1 None
ERR5865668 MDR-TB lineage2.2.1 None
ERR2199883 Other lineage3 de
SRR7592330 Pre-XDR-TB lineage4.1.2.1 None
SRR27069441 Pre-XDR-TB lineage2.2.1 None
ERR5866242 MDR-TB lineage2.2.1 None
SRR25827343 Pre-XDR-TB lineage2.2.1.1;lineage3 None
ERR4797417 Pre-XDR-TB lineage2.2.1.1;lineage4.1.1.1 in
SRR5341305 Pre-XDR-TB lineage3 in
SRR2100132 Pre-XDR-TB lineage4.8 None
ERR5864621 MDR-TB lineage2.2.1 None
ERR5866241 MDR-TB lineage2.2.1 None
ERR13260063 MDR-TB lineage3 None
SRR5341238 Pre-XDR-TB lineage2.2.1.1 in
SRR15316393 Pre-XDR-TB lineage2.2.1 None
SRR1049019 Pre-XDR-TB lineage2.2.2 None
ERR2514559 MDR-TB lineage4.1.2.1 gb
SRR6832155 HR-TB lineage4.2.1 None
SRR9738483 MDR-TB lineage4.1.2.1 None
SAMN02360593 Pre-XDR-TB lineage2.2.2 kr
SRR10040140 MDR-TB lineage2.2.1 None
ERR4798305 Pre-XDR-TB lineage2.2.1.1 in
ERR4816102 Pre-XDR-TB lineage2.2.1.1 None
SRR7341673 HR-TB lineage4.8 ro
ERR2516856 Pre-XDR-TB lineage2.2.1 gb
ERR4798330 XDR-TB lineage2.2.1.1 in
SRR25827810 Pre-XDR-TB lineage2.2.1.1;lineage3 None
SRR7592349 MDR-TB lineage4.1.2.1 None
ERR4810889 Pre-XDR-TB lineage4.4.2 cn
ERR5866243 MDR-TB lineage2.2.1 None
ERR4799634 XDR-TB lineage2.2.1.1 in
ERR4828788 XDR-TB lineage4.1.2.1 None
SRR28044927 Pre-XDR-TB lineage2.2.1 None
SRR25207116 Pre-XDR-TB lineage4.4.2 None
ERR13266112 Pre-XDR-TB lineage2.2.1.1 None
ERR5865534 MDR-TB lineage2.2.1 None
ERR5866353 MDR-TB lineage2.2.1 None
ERR2510498 Pre-XDR-TB lineage3 pk
ERR4797865 XDR-TB lineage2.2.1.1 in
SRR7829582 Pre-XDR-TB lineage4.1.2.1 None
ERR5864619 MDR-TB lineage2.2.1 None
ERR5864625 MDR-TB lineage2.2.1 None
ERR11067959 HR-TB lineage2.2.1 None
SRR16156780 Pre-XDR-TB lineage4.1.1.3 None
SRR25827344 XDR-TB lineage2.2.1.1 None
ERR5864618 MDR-TB lineage2.2.1 None
SRR25389455 Pre-XDR-TB lineage2.2.1.1 None
ERR5864620 MDR-TB lineage2.2.1 None
ERR072083 Pre-XDR-TB lineage4.8 None
ERR4799730 Pre-XDR-TB lineage2.2.1.1 in
SRR29231180 MDR-TB lineage2.2.1.1 None
ERR4799358 Pre-XDR-TB lineage2.2.1.1 in
ERR4798254 Pre-XDR-TB lineage2.2.1.1 in
ERR4830934 Pre-XDR-TB lineage2.2.1.1 np
ERR5866368 MDR-TB lineage2.2.1 None
ERR5865667 MDR-TB lineage2.2.1 None
ERR5864624 MDR-TB lineage2.2.1 None
ERR047891 Pre-XDR-TB lineage4.8 None
ERR1873392 Pre-XDR-TB lineage4.1.1.3 None
ERR4796368 Pre-XDR-TB lineage2.2.1.1 None
SRR16156787 Pre-XDR-TB lineage2.2.1 None
ERR11067190 MDR-TB lineage5.1.3 None
SRR24466751 MDR-TB lineage4.1.2.1 None
SRR16088171 HR-TB lineage2.2.1 None
ERR5866367 MDR-TB lineage2.2.1 None
SRR6458423 HR-TB lineage2.2.1 None
ERR4797047 Pre-XDR-TB lineage2.2.1.1 in
ERR4798953 MDR-TB lineage2.2.1.1 in
ERR5864622 MDR-TB lineage2.2.1 None
DRR474118 Other lineage2.2.1 None
SRR7069211 MDR-TB lineage4.1.2.1 None
ERR5864623 MDR-TB lineage2.2.1 None
ERR5865885 MDR-TB lineage2.2.1 None
SRR16156791 Pre-XDR-TB lineage4.1.1.3 None
SRR25827594 Pre-XDR-TB lineage2.2.1.1 None
SRR16088037 MDR-TB lineage2.2.1 None
SRR16088523 HR-TB lineage2.2.1 None
ERR4797945 Pre-XDR-TB lineage2.2.1.1 in
SRR5153323 MDR-TB lineage2.2.1 None
SRR7781508 XDR-TB lineage4.1.2.1 None
ERR4797803 Pre-XDR-TB lineage3.1 in
SRR18715413 MDR-TB lineage2.2.1 None
ERR5866488 MDR-TB lineage2.2.1 None
SRR28044925 Pre-XDR-TB lineage2.2.1 None
SRR7517732 MDR-TB lineage3.1.2.1 None
ERR4797849 XDR-TB lineage2.2.1.1 in
SRR25389453 Pre-XDR-TB lineage2.2.1.1 None
DRR188926 Other lineage2.2.1 None
ERR4798240 Pre-XDR-TB lineage2.2.1.1 in
ERR4799342 Pre-XDR-TB lineage2.2.1.1 None
ERR4816578 Pre-XDR-TB lineage2.2.1.1 gb
SRR11033760 HR-TB lineage2.2.1 None
SRR10040264 Pre-XDR-TB lineage2.2.1 None
SRR25827447 Pre-XDR-TB lineage2.2.1.1 None
SRR16156795 MDR-TB lineage2.2.1 None
ERR4797713 HR-TB lineage3 in
ERR046944 Pre-XDR-TB lineage4.8 None
ERR4796442 Pre-XDR-TB lineage2.2.1.1 in
ERR4796972 Pre-XDR-TB lineage2.2.1.1 in
ERR2514451 MDR-TB lineage4.1.2.1 gb
SRR16156801 MDR-TB lineage2.2.1 None
SRR5341288 Pre-XDR-TB lineage3 None
SRR1013626 Pre-XDR-TB lineage2.2.2 None
SRR10397117 MDR-TB lineage2.2.1 None
ERR4798356 Pre-XDR-TB lineage2.2.1.1 in
ERR4798726 Pre-XDR-TB lineage2.2.1.1 in
ERR270781 HR-TB lineage3.1.2 None
SRR7069453 MDR-TB lineage4.1.2.1 None
ERR4798970 Pre-XDR-TB lineage2.2.1.1 in
SRR6458401 Pre-XDR-TB lineage2.2.1 None
ERR4799657 XDR-TB lineage2.2.1.1 None
ERR4797061 Pre-XDR-TB lineage2.2.1.1 in
ERR5865538 MDR-TB lineage2.2.1 None
ERR4799853 Pre-XDR-TB lineage2.2.1.1 in
ERR2510729 Pre-XDR-TB lineage4.1.2.1 it
ERR4796776 Pre-XDR-TB lineage2.2.1.1 in
SRR25827310 Pre-XDR-TB lineage2.2.1.1 None
ERR2516740 MDR-TB lineage4.1.2.1 gb
SRR2100881 HR-TB lineage3.1.2 None
ERR4830930 Pre-XDR-TB lineage2.2.1.1 np
ERR046796 Pre-XDR-TB lineage4.8 gb
SRR29273696 MDR-TB lineage4.1.2.1 None
ERR4797727 Pre-XDR-TB lineage2.2.1.1 in
SRR5486870 MDR-TB lineage4.1.2.1 None
SRR1013625 Pre-XDR-TB lineage2.2.2 None
ERR4797413 Pre-XDR-TB lineage2.2.1.1 in
ERR1873531 Pre-XDR-TB lineage4.1.1.3 za
SRR16156800 Pre-XDR-TB lineage4.1.1.3 None
ERR2199882 Other lineage3 None
ERR4798392 Pre-XDR-TB lineage4.8 in
ERR4798153 HR-TB lineage3 in
ERR046903 Pre-XDR-TB lineage4.8 gb