Rv3854c - c.1242delT


Drug resistance types
0 Sensitive 0 RR-TB 14 HR-TB 45 MDR-TB 78 Pre-XDR-TB 8 XDR-TB 6 Other
lineage Counts
lineage Count
lineage2.2.1 49
lineage3 8
lineage2.2.1.1 44
lineage4.1.1.3 6
lineage4.1.2.1 17
lineage4.8 9
lineage2.2.1.1;lineage3 2
lineage3.1 1
lineage3.1.2.1 1
lineage3.1.2 2
lineage2.2.2 5
lineage4.2.1 1
lineage1.1.1 1
lineage4.2.1.1 1
lineage4.4.2 2
lineage2.2.1.1;lineage4.1.1.1 1
lineage5.1.3 1
spoligotype Counts
spoligotype Count
None 151
Geographic prevalence
Country level data for this variant is available for 52 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR27069441 Pre-XDR-TB lineage2.2.1 None
ERR2510498 Pre-XDR-TB lineage3 pk
SRR25827354 Pre-XDR-TB lineage2.2.1.1 None
ERR4797849 XDR-TB lineage2.2.1.1 in
SRR15316393 Pre-XDR-TB lineage2.2.1 None
ERR5866368 MDR-TB lineage2.2.1 None
ERR1873392 Pre-XDR-TB lineage4.1.1.3 None
ERR4798416 Pre-XDR-TB lineage2.2.1.1 in
SRR12882333 Other lineage3 None
DRR474118 Other lineage2.2.1 None
ERR4796368 Pre-XDR-TB lineage2.2.1.1 None
SRR16156787 Pre-XDR-TB lineage2.2.1 None
SRR7592330 Pre-XDR-TB lineage4.1.2.1 None
ERR5866241 MDR-TB lineage2.2.1 None
ERR5865538 MDR-TB lineage2.2.1 None
ERR4799853 Pre-XDR-TB lineage2.2.1.1 in
DRR474117 Other lineage2.2.1 None
ERR046944 Pre-XDR-TB lineage4.8 None
SRR24466751 MDR-TB lineage4.1.2.1 None
SRR2100132 Pre-XDR-TB lineage4.8 None
ERR047891 Pre-XDR-TB lineage4.8 None
ERR5864624 MDR-TB lineage2.2.1 None
ERR4796776 Pre-XDR-TB lineage2.2.1.1 in
SRR25827310 Pre-XDR-TB lineage2.2.1.1 None
SRR10040264 Pre-XDR-TB lineage2.2.1 None
ERR4797865 XDR-TB lineage2.2.1.1 in
ERR2516740 MDR-TB lineage4.1.2.1 gb
ERR2514559 MDR-TB lineage4.1.2.1 gb
ERR5864622 MDR-TB lineage2.2.1 None
SRR9738483 MDR-TB lineage4.1.2.1 None
ERR4799358 Pre-XDR-TB lineage2.2.1.1 in
ERR5866366 MDR-TB lineage2.2.1 None
ERR4797945 Pre-XDR-TB lineage2.2.1.1 in
ERR4830930 Pre-XDR-TB lineage2.2.1.1 np
ERR046796 Pre-XDR-TB lineage4.8 gb
SRR7069211 MDR-TB lineage4.1.2.1 None
ERR2516856 Pre-XDR-TB lineage2.2.1 gb
SRR25827810 Pre-XDR-TB lineage2.2.1.1;lineage3 None
SRR25827594 Pre-XDR-TB lineage2.2.1.1 None
ERR5866378 Pre-XDR-TB lineage2.2.1 None
ERR4799634 XDR-TB lineage2.2.1.1 in
ERR4797803 Pre-XDR-TB lineage3.1 in
ERR4797061 Pre-XDR-TB lineage2.2.1.1 in
ERR5866488 MDR-TB lineage2.2.1 None
ERR4798153 HR-TB lineage3 in
SRR7517732 MDR-TB lineage3.1.2.1 None
ERR4798351 Pre-XDR-TB lineage2.2.1.1 in
ERR5864618 MDR-TB lineage2.2.1 None
SRR25389455 Pre-XDR-TB lineage2.2.1.1 None
ERR4800059 Pre-XDR-TB lineage2.2.1.1 in
ERR5866243 MDR-TB lineage2.2.1 None
ERR4799730 Pre-XDR-TB lineage2.2.1.1 in
SRR25389454 Pre-XDR-TB lineage2.2.1.1 None
ERR4796442 Pre-XDR-TB lineage2.2.1.1 in
ERR5864621 MDR-TB lineage2.2.1 None
ERR4799073 Pre-XDR-TB lineage4.8 in
ERR5865535 MDR-TB lineage2.2.1 None
SRR7653602 Pre-XDR-TB lineage2.2.1 None
SRR25827343 Pre-XDR-TB lineage2.2.1.1;lineage3 None
SRR19115700 MDR-TB lineage4.1.2.1 None
SRR6458401 Pre-XDR-TB lineage2.2.1 None
SRR7069453 MDR-TB lineage4.1.2.1 None
SRR2100881 HR-TB lineage3.1.2 None
SRR5341305 Pre-XDR-TB lineage3 in
ERR5864623 MDR-TB lineage2.2.1 None
ERR4798970 Pre-XDR-TB lineage2.2.1.1 in
ERR4798356 Pre-XDR-TB lineage2.2.1.1 in
ERR4799657 XDR-TB lineage2.2.1.1 None
SRR1013625 Pre-XDR-TB lineage2.2.2 None
ERR2510729 Pre-XDR-TB lineage4.1.2.1 it
SRR25389453 Pre-XDR-TB lineage2.2.1.1 None
ERR4798953 MDR-TB lineage2.2.1.1 in
SRR6832155 HR-TB lineage4.2.1 None
ERR4830909 Pre-XDR-TB lineage2.2.1.1 np
ERR751803 HR-TB lineage1.1.1 th
SAMN02360593 Pre-XDR-TB lineage2.2.2 kr
ERR11067959 HR-TB lineage2.2.1 None
SRR11033760 HR-TB lineage2.2.1 None
ERR4798305 Pre-XDR-TB lineage2.2.1.1 in
SRR7341673 HR-TB lineage4.8 ro
ERR5864619 MDR-TB lineage2.2.1 None
SRR7829582 Pre-XDR-TB lineage4.1.2.1 None
SRR5486870 MDR-TB lineage4.1.2.1 None
ERR5865972 MDR-TB lineage2.2.1 None
SRR6458423 HR-TB lineage2.2.1 None
ERR5865668 MDR-TB lineage2.2.1 None
ERR5866242 MDR-TB lineage2.2.1 None
SRR16156800 Pre-XDR-TB lineage4.1.1.3 None
SRR25827344 XDR-TB lineage2.2.1.1 None
ERR5866353 MDR-TB lineage2.2.1 None
ERR2514451 MDR-TB lineage4.1.2.1 gb
ERR4797713 HR-TB lineage3 in
ERR4798392 Pre-XDR-TB lineage4.8 in
SRR18715413 MDR-TB lineage2.2.1 None
ERR4828788 XDR-TB lineage4.1.2.1 None
SRR1049020 Pre-XDR-TB lineage2.2.2 None
SRR16088171 HR-TB lineage2.2.1 None
ERR4798726 Pre-XDR-TB lineage2.2.1.1 in
SRR28044927 Pre-XDR-TB lineage2.2.1 None
SRR28045972 Pre-XDR-TB lineage2.2.1.1 None
SRR28044925 Pre-XDR-TB lineage2.2.1 None
SRR6785398 HR-TB lineage4.2.1.1 None
ERR5864620 MDR-TB lineage2.2.1 None
ERR072083 Pre-XDR-TB lineage4.8 None
ERR5865534 MDR-TB lineage2.2.1 None
ERR5866489 MDR-TB lineage2.2.1 None
ERR4796972 Pre-XDR-TB lineage2.2.1.1 in
ERR5864625 MDR-TB lineage2.2.1 None
ERR4798254 Pre-XDR-TB lineage2.2.1.1 in
SRR1013626 Pre-XDR-TB lineage2.2.2 None
ERR046903 Pre-XDR-TB lineage4.8 gb
SRR16088037 MDR-TB lineage2.2.1 None
ERR270781 HR-TB lineage3.1.2 None
ERR4816578 Pre-XDR-TB lineage2.2.1.1 gb
ERR4797727 Pre-XDR-TB lineage2.2.1.1 in
SRR5341288 Pre-XDR-TB lineage3 None
SRR16156795 MDR-TB lineage2.2.1 None
SRR25207116 Pre-XDR-TB lineage4.4.2 None
ERR2199883 Other lineage3 de
SRR16156780 Pre-XDR-TB lineage4.1.1.3 None
ERR4797417 Pre-XDR-TB lineage2.2.1.1;lineage4.1.1.1 in
ERR4798240 Pre-XDR-TB lineage2.2.1.1 in
ERR5866367 MDR-TB lineage2.2.1 None
ERR2510676 MDR-TB lineage4.1.2.1 it
ERR4797047 Pre-XDR-TB lineage2.2.1.1 in
ERR11067190 MDR-TB lineage5.1.3 None
SRR25827447 Pre-XDR-TB lineage2.2.1.1 None
ERR4830934 Pre-XDR-TB lineage2.2.1.1 np
ERR4816102 Pre-XDR-TB lineage2.2.1.1 None
SRR5341238 Pre-XDR-TB lineage2.2.1.1 in
ERR5865885 MDR-TB lineage2.2.1 None
SRR1049019 Pre-XDR-TB lineage2.2.2 None
ERR4798330 XDR-TB lineage2.2.1.1 in
SRR19304074 HR-TB lineage4.1.2.1 None
SRR10040140 MDR-TB lineage2.2.1 None
ERR4799342 Pre-XDR-TB lineage2.2.1.1 None
SRR16156779 Pre-XDR-TB lineage4.1.1.3 None
SRR16156791 Pre-XDR-TB lineage4.1.1.3 None
ERR4797413 Pre-XDR-TB lineage2.2.1.1 in
SRR7592349 MDR-TB lineage4.1.2.1 None
SRR10397117 MDR-TB lineage2.2.1 None
ERR1873531 Pre-XDR-TB lineage4.1.1.3 za
DRR188926 Other lineage2.2.1 None
ERR5865667 MDR-TB lineage2.2.1 None
SRR16156801 MDR-TB lineage2.2.1 None
SRR16088523 HR-TB lineage2.2.1 None
SRR5153323 MDR-TB lineage2.2.1 None
ERR4810889 Pre-XDR-TB lineage4.4.2 cn
SRR7781508 XDR-TB lineage4.1.2.1 None
ERR4815940 Pre-XDR-TB lineage2.2.1.1 None
ERR2199882 Other lineage3 None