Rv3854c - c.1242delT
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
16 HR-TB
53 MDR-TB
86 Pre-XDR-TB
8 XDR-TB
6 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1.1 | 49 |
| lineage2.2.2 | 6 |
| lineage2.2.1 | 55 |
| lineage4.1.2.1 | 21 |
| lineage1.1.1 | 1 |
| lineage3 | 9 |
| lineage4.8 | 9 |
| lineage3.1.2 | 2 |
| lineage4.2.1 | 1 |
| lineage2.2.1.1;lineage3 | 2 |
| lineage3.1 | 1 |
| lineage2.2.1.1;lineage4.1.1.1 | 1 |
| lineage4.4.2 | 2 |
| lineage4.1.1.3 | 6 |
| lineage4.2.1.1 | 1 |
| lineage5.1.3 | 1 |
| lineage2.2.1.1;lineage3.1.2;lineage4.4 | 1 |
| lineage3.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 169 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4798330 | XDR-TB | lineage2.2.1.1 | in | ERR4798351 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4798416 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4796776 | Pre-XDR-TB | lineage2.2.1.1 | in | SAMN02360593 | Pre-XDR-TB | lineage2.2.2 | kr | SRR18715413 | MDR-TB | lineage2.2.1 | None | SRR19304074 | HR-TB | lineage4.1.2.1 | None | DRR474117 | Other | lineage2.2.1 | None | SRR28044927 | Pre-XDR-TB | lineage2.2.1 | None | ERR751803 | HR-TB | lineage1.1.1 | th | ERR4830930 | Pre-XDR-TB | lineage2.2.1.1 | np | SRR25389454 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR28044925 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830909 | Pre-XDR-TB | lineage2.2.1.1 | np | ERR4828788 | XDR-TB | lineage4.1.2.1 | None | ERR4830934 | Pre-XDR-TB | lineage2.2.1.1 | np | ERR4830943 | Pre-XDR-TB | lineage2.2.1.1 | np | ERR2510498 | Pre-XDR-TB | lineage3 | pk | SRR2100132 | Pre-XDR-TB | lineage4.8 | None | SRR2100881 | HR-TB | lineage3.1.2 | None | ERR4816578 | Pre-XDR-TB | lineage2.2.1.1 | gb | ERR2199883 | Other | lineage3 | de | ERR11067959 | HR-TB | lineage2.2.1 | None | DRR188926 | Other | lineage2.2.1 | None | ERR4799342 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR5341238 | Pre-XDR-TB | lineage2.2.1.1 | in | SRR11033760 | HR-TB | lineage2.2.1 | None | SRR25389455 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR046944 | Pre-XDR-TB | lineage4.8 | None | SRR29231180 | MDR-TB | lineage2.2.1.1 | None | ERR2510676 | MDR-TB | lineage4.1.2.1 | it | ERR2510729 | Pre-XDR-TB | lineage4.1.2.1 | it | SRR7592330 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR5865667 | MDR-TB | lineage2.2.1 | None | SRR27069441 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013626 | Pre-XDR-TB | lineage2.2.2 | None | ERR5866242 | MDR-TB | lineage2.2.1 | None | ERR5864624 | MDR-TB | lineage2.2.1 | None | SRR29274015 | MDR-TB | lineage4.1.2.1 | None | SRR16156787 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864621 | MDR-TB | lineage2.2.1 | None | ERR5866241 | MDR-TB | lineage2.2.1 | None | SRR16088171 | HR-TB | lineage2.2.1 | None | SRR29273696 | MDR-TB | lineage4.1.2.1 | None | ERR13267112 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR5866367 | MDR-TB | lineage2.2.1 | None | SRR15316393 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827310 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR1049019 | Pre-XDR-TB | lineage2.2.2 | None | SRR29681468 | Pre-XDR-TB | lineage2.2.1 | None | SRR23862076 | MDR-TB | lineage2.2.1 | None | SRR6832155 | HR-TB | lineage4.2.1 | None | SRR9738483 | MDR-TB | lineage4.1.2.1 | None | ERR5864622 | MDR-TB | lineage2.2.1 | None | ERR4816102 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR25827810 | Pre-XDR-TB | lineage2.2.1.1;lineage3 | None | SRR29273806 | MDR-TB | lineage4.1.2.1 | None | SRR5341288 | Pre-XDR-TB | lineage3 | None | ERR4796442 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4797061 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4797727 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4797803 | Pre-XDR-TB | lineage3.1 | in | ERR4797849 | XDR-TB | lineage2.2.1.1 | in | ERR4798970 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4797413 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4797417 | Pre-XDR-TB | lineage2.2.1.1;lineage4.1.1.1 | in | ERR4799730 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR13195540 | HR-TB | lineage2.2.2 | None | ERR4799853 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4797713 | HR-TB | lineage3 | in | ERR4800059 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR2199882 | Other | lineage3 | None | SRR1049020 | Pre-XDR-TB | lineage2.2.2 | None | ERR4810889 | Pre-XDR-TB | lineage4.4.2 | cn | SRR28045972 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR25389453 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR5865534 | MDR-TB | lineage2.2.1 | None | ERR5866353 | MDR-TB | lineage2.2.1 | None | ERR046796 | Pre-XDR-TB | lineage4.8 | gb | ERR1873531 | Pre-XDR-TB | lineage4.1.1.3 | za | SRR7341673 | HR-TB | lineage4.8 | ro | ERR2517052 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2516856 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2516740 | MDR-TB | lineage4.1.2.1 | gb | SRR16156779 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR5865972 | MDR-TB | lineage2.2.1 | None | SRR28859785 | HR-TB | lineage2.2.1 | None | SRR16156780 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR5866366 | MDR-TB | lineage2.2.1 | None | ERR5866378 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156795 | MDR-TB | lineage2.2.1 | None | ERR5864620 | MDR-TB | lineage2.2.1 | None | ERR072083 | Pre-XDR-TB | lineage4.8 | None | SRR6785398 | HR-TB | lineage4.2.1.1 | None | ERR4797865 | XDR-TB | lineage2.2.1.1 | in | ERR5865535 | MDR-TB | lineage2.2.1 | None | ERR4799634 | XDR-TB | lineage2.2.1.1 | in | SRR19115700 | MDR-TB | lineage4.1.2.1 | None | SRR16156801 | MDR-TB | lineage2.2.1 | None | ERR5866368 | MDR-TB | lineage2.2.1 | None | SRR25827343 | Pre-XDR-TB | lineage2.2.1.1;lineage3 | None | ERR047891 | Pre-XDR-TB | lineage4.8 | None | ERR1873392 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4796368 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR11067190 | MDR-TB | lineage5.1.3 | None | SRR24466751 | MDR-TB | lineage4.1.2.1 | None | ERR5865538 | MDR-TB | lineage2.2.1 | None | ERR13260063 | MDR-TB | lineage3 | None | SRR10040140 | MDR-TB | lineage2.2.1 | None | SRR25827344 | XDR-TB | lineage2.2.1.1 | None | SRR7069211 | MDR-TB | lineage4.1.2.1 | None | SRR25827447 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR5864623 | MDR-TB | lineage2.2.1 | None | ERR13266112 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR5865885 | MDR-TB | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR7592349 | MDR-TB | lineage4.1.2.1 | None | SRR29539800 | MDR-TB | lineage2.2.1 | None | ERR13261264 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR13261471 | Pre-XDR-TB | lineage2.2.1.1;lineage3.1.2;lineage4.4 | None | SRR16088037 | MDR-TB | lineage2.2.1 | None | SRR16156800 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR16088523 | HR-TB | lineage2.2.1 | None | SRR5153323 | MDR-TB | lineage2.2.1 | None | ERR4796972 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4798153 | HR-TB | lineage3 | in | ERR4798240 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4797047 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4798305 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4798392 | Pre-XDR-TB | lineage4.8 | in | ERR4798356 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4798726 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4798953 | MDR-TB | lineage2.2.1.1 | in | ERR4799073 | Pre-XDR-TB | lineage4.8 | in | SRR12882333 | Other | lineage3 | None | ERR5866488 | MDR-TB | lineage2.2.1 | None | SRR7517732 | MDR-TB | lineage3.1.2.1 | None | ERR046903 | Pre-XDR-TB | lineage4.8 | gb | SRR25207116 | Pre-XDR-TB | lineage4.4.2 | None | ERR2514451 | MDR-TB | lineage4.1.2.1 | gb | ERR2514559 | MDR-TB | lineage4.1.2.1 | gb | SRR5341305 | Pre-XDR-TB | lineage3 | in | SRR7829582 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR5864619 | MDR-TB | lineage2.2.1 | None | ERR5864625 | MDR-TB | lineage2.2.1 | None | ERR4815940 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR10040264 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864618 | MDR-TB | lineage2.2.1 | None | SRR25827354 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR5866489 | MDR-TB | lineage2.2.1 | None | SRR29772413 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798254 | Pre-XDR-TB | lineage2.2.1.1 | in | SRR7653602 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799657 | XDR-TB | lineage2.2.1.1 | None | ERR5865668 | MDR-TB | lineage2.2.1 | None | SRR10397117 | MDR-TB | lineage2.2.1 | None | ERR270781 | HR-TB | lineage3.1.2 | None | SRR7069453 | MDR-TB | lineage4.1.2.1 | None | SRR6458401 | Pre-XDR-TB | lineage2.2.1 | None | DRR474118 | Other | lineage2.2.1 | None | SRR5486870 | MDR-TB | lineage4.1.2.1 | None | SRR16156791 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR25827594 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR1013625 | Pre-XDR-TB | lineage2.2.2 | None | ERR11082954 | MDR-TB | lineage4.1.2.1 | None | ERR5866243 | MDR-TB | lineage2.2.1 | None | ERR4799358 | Pre-XDR-TB | lineage2.2.1.1 | in | SRR7781508 | XDR-TB | lineage4.1.2.1 | None | ERR4797945 | Pre-XDR-TB | lineage2.2.1.1 | in |
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