Rv3854c - c.1290delC
Drug resistance types
0 Sensitive
0 RR-TB
0 HR-TB
14 MDR-TB
19 Pre-XDR-TB
0 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3;lineage2.2 | 2 |
| lineage4.1.1.3 | 7 |
| lineage4.6.2.2 | 5 |
| lineage4.3.4.2;lineage4.1.1.3 | 2 |
| lineage3 | 2 |
| lineage4.4.2 | 1 |
| lineage4 | 1 |
| lineage2.2.1 | 11 |
| lineage4.8.1 | 1 |
| lineage4.3.3;lineage2.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 33 |
Geographic prevalence
Country level data for this variant is available for 10 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1173800 | Pre-XDR-TB | lineage3;lineage2.2 | None | ERR7911536 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR8774512 | MDR-TB | lineage4.6.2.2 | None | ERR8774514 | MDR-TB | lineage4.6.2.2 | None | ERR9029872 | Pre-XDR-TB | lineage4.3.4.2;lineage4.1.1.3 | None | SRR1173380 | Pre-XDR-TB | lineage3;lineage2.2 | None | ERR9807036 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR22424750 | Pre-XDR-TB | lineage3 | None | ERR9806954 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR18002890 | MDR-TB | lineage4.4.2 | None | ERR4813333 | MDR-TB | lineage4 | None | ERR4896323 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8025595 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR7898220 | Pre-XDR-TB | lineage2.2.1 | in | ERR2515640 | Pre-XDR-TB | lineage4.1.1.3 | za | SRR9971125 | MDR-TB | lineage4.8.1 | None | ERR2516418 | Pre-XDR-TB | lineage2.2.1 | pe | SRR1723807 | MDR-TB | lineage2.2.1 | cn | ERR2516666 | Pre-XDR-TB | lineage2.2.1 | pe | ERR4829981 | MDR-TB | lineage4.6.2.2 | None | ERR4830745 | MDR-TB | lineage2.2.1 | ir | ERR3132222 | MDR-TB | lineage2.2.1 | None | SRR5709801 | Pre-XDR-TB | lineage2.2.1 | th | ERR10877856 | MDR-TB | lineage2.2.1 | None | ERR3287857 | Pre-XDR-TB | lineage4.3.4.2;lineage4.1.1.3 | None | ERR133821 | MDR-TB | lineage4.3.3;lineage2.2.1 | None | ERR1394278 | Pre-XDR-TB | lineage2.2.1 | None | ERR10869423 | Pre-XDR-TB | lineage2.2.1 | None | ERR5917974 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4423781 | MDR-TB | lineage4.6.2.2 | None | ERR4423782 | MDR-TB | lineage4.6.2.2 | None | ERR4796746 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799803 | MDR-TB | lineage3 | in |
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