Rv3854c - p.Ala341Val
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
1 RR-TB
10 HR-TB
48 MDR-TB
39 Pre-XDR-TB
4 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 12 |
| lineage4.1.2.1 | 39 |
| lineage2.2.1.1 | 35 |
| lineage1.1.3.1 | 4 |
| lineage2.2.1.1;lineage3 | 1 |
| 1 | |
| lineage2.2.1.1;lineage4.8 | 1 |
| lineage4.1.2 | 1 |
| lineage3 | 3 |
| lineage4.6.2.2 | 1 |
| lineage4.2.1 | 2 |
| lineage4.1 | 1 |
| lineage1.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 102 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29539155 | Pre-XDR-TB | lineage2.2.1 | None | ERR4872127 | MDR-TB | lineage4.1.2.1 | None | ERR552792 | MDR-TB | lineage4.1.2.1 | None | ERR4798230 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4799155 | Pre-XDR-TB | lineage2.2.1.1 | in | SRR29273902 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR10225472 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR25827773 | XDR-TB | lineage2.2.1.1 | None | ERR553095 | MDR-TB | lineage4.1.2.1 | None | ERR4872255 | MDR-TB | lineage4.1.2.1 | None | ERR550827 | MDR-TB | lineage4.1.2.1 | None | SRR25827764 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273726 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4797836 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4798531 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR552196 | MDR-TB | lineage4.1.2.1 | None | SRR29017071 | MDR-TB | lineage1.1.3.1 | None | ERR4800544 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4796973 | Pre-XDR-TB | lineage2.2.1 | in | ERR3287372 | MDR-TB | lineage4.1.2.1 | pe | ERR4831867 | MDR-TB | lineage2.2.1.1 | vn | ERR2516479 | MDR-TB | lineage4.1.2.1 | pe | SRR25827850 | XDR-TB | lineage2.2.1.1;lineage3 | None | ERR4553753 | MDR-TB | None | SRR5067444 | HR-TB | lineage2.2.1 | vn | SRR5067544 | MDR-TB | lineage2.2.1.1 | vn | ERR552700 | MDR-TB | lineage4.1.2.1 | None | ERR553094 | MDR-TB | lineage4.1.2.1 | None | ERR9119485 | MDR-TB | lineage4.1.2.1 | None | SRR25827379 | Pre-XDR-TB | lineage2.2.1.1;lineage4.8 | None | ERR4797604 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR2653194 | Pre-XDR-TB | lineage4.1.2 | None | SRR10525369 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR270768 | MDR-TB | lineage4.1.2.1 | None | ERR6879023 | MDR-TB | lineage4.1.2.1 | None | ERR4553541 | HR-TB | lineage1.1.3.1 | None | ERR553290 | MDR-TB | lineage4.1.2.1 | None | SRR28393278 | MDR-TB | lineage4.1.2.1 | None | ERR386971 | MDR-TB | lineage4.1.2.1 | None | ERR9119599 | MDR-TB | lineage4.1.2.1 | None | ERR553244 | MDR-TB | lineage4.1.2.1 | None | SRR29017495 | MDR-TB | lineage3 | None | ERR13266897 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR12142388 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119647 | MDR-TB | lineage4.1.2.1 | None | SRR25827312 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR2510490 | Pre-XDR-TB | lineage3 | pk | ERR4798337 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4797377 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR550654 | MDR-TB | lineage4.1.2.1 | None | ERR4797573 | Pre-XDR-TB | lineage2.2.1.1 | in | SRR25827838 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR4796491 | Pre-XDR-TB | lineage2.2.1.1 | in | SRR8651596 | Pre-XDR-TB | lineage2.2.1 | cn | ERR3287599 | HR-TB | lineage4.1.2.1 | pe | SRR28044928 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR4831857 | HR-TB | lineage2.2.1 | vn | ERR4829735 | MDR-TB | lineage4.1.2.1 | it | ERR2517010 | Pre-XDR-TB | lineage2.2.1.1 | gb | ERR2516841 | Pre-XDR-TB | lineage2.2.1.1 | gb | ERR2516824 | Pre-XDR-TB | lineage2.2.1.1 | gb | ERR1034724 | MDR-TB | lineage4.1.2.1 | pe | ERR552195 | MDR-TB | lineage4.1.2.1 | None | SRR5065606 | HR-TB | lineage2.2.1.1 | vn | ERR553315 | MDR-TB | lineage4.1.2.1 | None | ERR13261150 | Pre-XDR-TB | lineage2.2.1 | None | ERR4872079 | MDR-TB | lineage4.1.2.1 | None | ERR2516975 | MDR-TB | lineage4.1.2.1 | gb | ERR4813367 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4829163 | RR-TB | lineage4.6.2.2 | ng | ERR13261110 | HR-TB | lineage2.2.1.1 | None | ERR4830889 | XDR-TB | lineage2.2.1 | None | DRR130189 | Pre-XDR-TB | lineage2.2.1 | None | ERR4553607 | HR-TB | lineage1.1.3.1 | None | SRR29772431 | MDR-TB | lineage2.2.1.1 | None | ERR550873 | MDR-TB | lineage4.1.2.1 | None | SRR29017623 | MDR-TB | lineage3 | None | ERR13262167 | XDR-TB | lineage2.2.1.1 | None | ERR9119533 | MDR-TB | lineage4.1.2.1 | None | ERR13267007 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR7737629 | MDR-TB | lineage2.2.1.1 | None | ERR4796282 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR29273844 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13266450 | MDR-TB | lineage2.2.1.1 | None | ERR4798317 | Pre-XDR-TB | lineage2.2.1.1 | in | SRR23340155 | MDR-TB | lineage4.2.1 | None | ERR4800079 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR550826 | MDR-TB | lineage4.1.2.1 | None | SRR23340041 | MDR-TB | lineage4.2.1 | None | ERR4797056 | MDR-TB | lineage2.2.1.1 | in | SRR29017628 | MDR-TB | lineage1.1.3.1 | None | SRR8651597 | Pre-XDR-TB | lineage2.2.1 | cn | ERR3287541 | MDR-TB | lineage4.1.2.1 | None | SRR6153019 | HR-TB | lineage2.2.1.1 | ca | ERR4831963 | HR-TB | lineage2.2.1.1 | vn | ERR4831972 | HR-TB | lineage2.2.1.1 | None | SRR21276943 | Pre-XDR-TB | lineage2.2.1 | None | ERR550874 | MDR-TB | lineage4.1.2.1 | None | ERR552303 | MDR-TB | lineage4.1.2.1 | None | SRR2100869 | MDR-TB | lineage4.1.2.1 | None | ERR2516555 | MDR-TB | lineage4.1 | nl | SRR28045381 | MDR-TB | lineage1.1.2 | None |
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