Rv3854c - p.Gly43Cys
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
0 HR-TB
48 MDR-TB
88 Pre-XDR-TB
5 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 131 |
| lineage4.3.3 | 5 |
| lineage2.2.1;lineage4.3.2.1 | 1 |
| lineage2.2.1;lineage4.2.2.2 | 1 |
| lineage2.2.1;lineage4.8.1 | 1 |
| lineage2.2.1.1 | 1 |
| lineage2.2.1;lineage2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 141 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29096321 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096947 | MDR-TB | lineage2.2.1 | None | ERR11082023 | MDR-TB | lineage2.2.1 | None | ERR1034638 | Pre-XDR-TB | lineage2.2.1 | None | ERR4011058 | MDR-TB | lineage2.2.1 | None | SRR1163204 | Pre-XDR-TB | lineage4.3.3 | None | ERR1873432 | Pre-XDR-TB | lineage2.2.1 | None | SRR29094011 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093636 | Pre-XDR-TB | lineage2.2.1 | None | ERR1873560 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156802 | Pre-XDR-TB | lineage2.2.1 | None | SRR1172393 | Pre-XDR-TB | lineage4.3.3 | None | SRR29093283 | Pre-XDR-TB | lineage2.2.1;lineage4.3.2.1 | None | SRR29096417 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093540 | MDR-TB | lineage2.2.1 | None | ERR10112888 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093635 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093606 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096377 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093617 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096216 | MDR-TB | lineage2.2.1 | None | SRR10869232 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096616 | MDR-TB | lineage2.2.1 | None | SRR29093656 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156799 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093537 | MDR-TB | lineage2.2.1 | None | ERR4011061 | Pre-XDR-TB | lineage2.2.1 | None | ERR4011075 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096855 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093846 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093765 | XDR-TB | lineage2.2.1 | None | ERR9806878 | MDR-TB | lineage2.2.1 | None | SRR29096499 | MDR-TB | lineage2.2.1;lineage4.2.2.2 | None | ERR10748114 | Pre-XDR-TB | lineage2.2.1;lineage4.8.1 | None | ERR1034644 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093263 | MDR-TB | lineage2.2.1 | None | ERR7911526 | Pre-XDR-TB | lineage2.2.1 | za | ERR1873509 | Pre-XDR-TB | lineage2.2.1 | za | ERR4011057 | Pre-XDR-TB | lineage2.2.1 | None | ERR9993142 | Pre-XDR-TB | lineage2.2.1 | None | ERR2515371 | Pre-XDR-TB | lineage2.2.1 | za | SRR1169040 | Pre-XDR-TB | lineage4.3.3 | None | ERR13288936 | XDR-TB | lineage2.2.1 | None | SRR29093666 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093576 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096337 | MDR-TB | lineage2.2.1 | None | SRR29096569 | MDR-TB | lineage2.2.1 | None | ERR5987274 | MDR-TB | lineage2.2.1 | None | SRR29096519 | Pre-XDR-TB | lineage2.2.1 | None | SRR29094090 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831536 | XDR-TB | lineage2.2.1 | None | SRR29097095 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093825 | MDR-TB | lineage2.2.1 | None | SRR29096799 | MDR-TB | lineage2.2.1 | None | ERR4011065 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096112 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096612 | MDR-TB | lineage2.2.1 | None | SRR15316175 | MDR-TB | lineage2.2.1 | None | SRR16156798 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093294 | MDR-TB | lineage2.2.1 | None | SRR29056303 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093501 | MDR-TB | lineage2.2.1 | None | SRR16156733 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025455 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034637 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096511 | Pre-XDR-TB | lineage2.2.1 | None | ERR9992618 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093655 | MDR-TB | lineage2.2.1 | None | SRR29094081 | MDR-TB | lineage2.2.1 | None | SRR29093489 | MDR-TB | lineage2.2.1 | None | SRR29093763 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156777 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093276 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284586 | MDR-TB | lineage2.2.1 | None | SRR29093259 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096629 | MDR-TB | lineage2.2.1 | None | SRR29096351 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093854 | MDR-TB | lineage2.2.1 | None | ERR8025626 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093618 | Pre-XDR-TB | lineage2.2.1 | None | SRR29094075 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831535 | XDR-TB | lineage2.2.1 | None | SRR29096596 | MDR-TB | lineage2.2.1 | None | SRR29096484 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025609 | Pre-XDR-TB | lineage2.2.1 | None | SRR1163399 | Pre-XDR-TB | lineage4.3.3 | None | ERR5758371 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869258 | Pre-XDR-TB | lineage2.2.1 | None | ERR1873447 | Pre-XDR-TB | lineage2.2.1 | za | ERR1873562 | Pre-XDR-TB | lineage2.2.1 | za | SRR29093596 | MDR-TB | lineage2.2.1 | None | SRR29096952 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096347 | MDR-TB | lineage2.2.1 | None | SRR10869280 | Pre-XDR-TB | lineage2.2.1 | None | ERR4011086 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093696 | Pre-XDR-TB | lineage2.2.1 | None | ERR9992676 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093757 | MDR-TB | lineage2.2.1 | None | SRR29093563 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096816 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096668 | MDR-TB | lineage2.2.1 | None | SRR29093314 | MDR-TB | lineage2.2.1 | None | SRR29096856 | MDR-TB | lineage2.2.1 | None | SRR29093891 | MDR-TB | lineage2.2.1 | None | SRR29093568 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093884 | Pre-XDR-TB | lineage2.2.1 | None | ERR4011063 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096302 | Pre-XDR-TB | lineage2.2.1 | None | ERR9807039 | Pre-XDR-TB | lineage2.2.1 | None | ERR10112836 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093335 | MDR-TB | lineage2.2.1 | None | SRR29093506 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093354 | MDR-TB | lineage2.2.1 | None | SRR29094068 | MDR-TB | lineage2.2.1 | None | SRR8758881 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096827 | MDR-TB | lineage2.2.1 | None | SRR29094012 | MDR-TB | lineage2.2.1.1 | None | SRR29096349 | MDR-TB | lineage2.2.1 | None | SRR29093699 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025608 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096479 | MDR-TB | lineage2.2.1 | None | SRR29096489 | MDR-TB | lineage2.2.1 | None | SRR29094019 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096372 | MDR-TB | lineage2.2.1 | None | SRR29096858 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093562 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096839 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093840 | MDR-TB | lineage2.2.1 | None | SRR29096352 | MDR-TB | lineage2.2.1 | None | SRR29093832 | MDR-TB | lineage2.2.1 | None | ERR7911539 | Pre-XDR-TB | lineage2.2.1 | za | ERR7911542 | Pre-XDR-TB | lineage2.2.1 | za | ERR7911547 | Pre-XDR-TB | lineage2.2.1;lineage2.2.2 | za | ERR7911611 | XDR-TB | lineage2.2.1 | za | ERR7911619 | Pre-XDR-TB | lineage2.2.1 | za | ERR7911652 | MDR-TB | lineage2.2.1 | za | ERR1023465 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119830 | MDR-TB | lineage2.2.1 | None | SRR29096597 | MDR-TB | lineage2.2.1 | None | SAMN02419678 | Pre-XDR-TB | lineage4.3.3 | by | SRR29094002 | Pre-XDR-TB | lineage2.2.1 | None |
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