Rv3854c - p.Pro192Thr
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
39 Sensitive
0 RR-TB
15 HR-TB
59 MDR-TB
24 Pre-XDR-TB
1 XDR-TB
3 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.3 | 27 |
| lineage4.1.2.1 | 34 |
| lineage2.2.1 | 7 |
| lineage4.4.1.1 | 4 |
| lineage3 | 9 |
| lineage1.1.1 | 23 |
| lineage6.3.1 | 5 |
| lineage4.3.3 | 4 |
| 1 | |
| lineage4.1.1.3 | 7 |
| lineage1.1.2 | 2 |
| lineage4.8 | 4 |
| lineage4.6.2.2 | 1 |
| lineage4.1 | 4 |
| lineage4.3.4.2.1 | 4 |
| lineage4 | 1 |
| lineage2.2.1;lineage4.3.3 | 1 |
| lineage1.2.2.2 | 2 |
| lineage2.2.1;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 141 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4423600 | HR-TB | lineage4.1.3 | None | SRR29273658 | MDR-TB | lineage4.1.2.1 | None | SRR25827567 | Pre-XDR-TB | lineage2.2.1 | None | ERR8975419 | HR-TB | lineage4.4.1.1 | None | SRR28858714 | Other | lineage3 | None | SRR25703770 | Sensitive | lineage1.1.1 | None | ERR10680025 | MDR-TB | lineage4.1.3 | None | SRR25703704 | Sensitive | lineage1.1.1 | None | SRR25703761 | Sensitive | lineage1.1.1 | None | SRR998621 | Sensitive | lineage6.3.1 | None | SRR29273843 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR25703699 | Sensitive | lineage1.1.1 | None | ERR11043475 | MDR-TB | lineage4.1.3 | None | SRR25703759 | Sensitive | lineage1.1.1 | None | SRR29274165 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR29273998 | MDR-TB | lineage4.1.2.1 | None | SRR25703697 | Sensitive | lineage1.1.1 | None | SRR25703771 | Sensitive | lineage1.1.1 | None | SRR29274050 | MDR-TB | lineage4.1.2.1 | None | SRR29273789 | MDR-TB | lineage4.1.2.1 | None | SRR29274080 | MDR-TB | lineage4.1.2.1 | None | ERR10680222 | MDR-TB | lineage4.1.3 | None | ERR7975639 | MDR-TB | lineage4.3.3 | None | SRR25703725 | Sensitive | lineage1.1.1 | None | SRR12199478 | Other | None | SRR1103621 | Pre-XDR-TB | lineage4.1.3 | None | SRR16156791 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR28045168 | Sensitive | lineage1.1.2 | None | SRR16156800 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4796564 | Sensitive | lineage3 | in | ERR3148151 | MDR-TB | lineage4.1.1.3 | None | SRR11444211 | HR-TB | lineage4.1.3 | None | SRR29274119 | MDR-TB | lineage4.1.2.1 | None | ERR11049483 | MDR-TB | lineage4.1.2.1 | None | SAMN02231164 | MDR-TB | lineage4.1.3 | None | SRR1166324 | Pre-XDR-TB | lineage4.1.2.1 | ro | SRR1162773 | Pre-XDR-TB | lineage4.1.3 | None | ERR234694 | Sensitive | lineage4.8 | ru | ERR1873531 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2517025 | MDR-TB | lineage4.6.2.2 | gb | ERR4814722 | HR-TB | lineage3 | gb | SRR11444304 | HR-TB | lineage4.1.3 | None | SRR16156779 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1162737 | HR-TB | lineage4.1 | None | ERR2653094 | Pre-XDR-TB | lineage4.3.4.2.1 | None | SRR10525333 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR25703746 | Sensitive | lineage1.1.1 | None | ERR12117913 | MDR-TB | lineage4.3.3 | None | ERR2653072 | Pre-XDR-TB | lineage4.3.4.2.1 | None | SRR16156780 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR28393618 | MDR-TB | lineage4 | None | SRR25703685 | Sensitive | lineage1.1.1 | None | SRR26112035 | Other | lineage3 | None | SRR1162480 | Pre-XDR-TB | lineage4.1.3 | None | SRR28646097 | MDR-TB | lineage4.1.2.1 | None | ERR10680106 | MDR-TB | lineage4.1.3 | None | ERR12117897 | MDR-TB | lineage4.3.3 | None | SRR998620 | Sensitive | lineage6.3.1 | None | ERR13279806 | MDR-TB | lineage4.1.2.1 | None | SRR29274163 | MDR-TB | lineage4.1.2.1 | None | SRR25703762 | Sensitive | lineage1.1.1 | None | SRR29273833 | MDR-TB | lineage4.1.2.1 | None | SRR10525356 | MDR-TB | lineage4.1.2.1 | None | ERR2652991 | Pre-XDR-TB | lineage4.3.4.2.1 | None | SRR29273616 | MDR-TB | lineage4.1.2.1 | None | SRR10525339 | MDR-TB | lineage4.1.2.1 | None | SRR28044897 | MDR-TB | lineage2.2.1 | None | ERR13284169 | MDR-TB | lineage4.8 | None | ERR13284972 | MDR-TB | lineage4.1.3 | None | ERR2653109 | Pre-XDR-TB | lineage4.3.4.2.1 | None | SRR29274160 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13276142 | MDR-TB | lineage4.1.3 | None | SRR6832061 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR11044463 | MDR-TB | lineage4.1.3 | None | SRR5486878 | MDR-TB | lineage4.1.2.1 | None | ERR13285103 | MDR-TB | lineage4.1.2.1 | None | SRR29273809 | MDR-TB | lineage4.1.2.1 | None | SRR29273873 | MDR-TB | lineage4.1.2.1 | None | SRR25703716 | Sensitive | lineage1.1.1 | None | ERR11082308 | MDR-TB | lineage4.1.3 | None | ERR10680118 | MDR-TB | lineage4.1.3 | None | SRR25703729 | Sensitive | lineage1.1.1 | None | ERR386795 | Sensitive | lineage3 | None | ERR4796627 | Pre-XDR-TB | lineage2.2.1 | in | SRR10525370 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR10680022 | MDR-TB | lineage4.1.3 | None | ERR3639732 | MDR-TB | lineage4.8 | None | SRR25703755 | Sensitive | lineage1.1.1 | None | ERR4797435 | Sensitive | lineage1.2.2.2 | in | SAMN02231168 | HR-TB | lineage4.1 | ml | SRR29274076 | MDR-TB | lineage4.1.2.1 | None | SRR25703688 | Sensitive | lineage1.1.1 | None | SAMN02231154 | Pre-XDR-TB | lineage4.1.3 | ml | ERR351863 | Sensitive | lineage3 | None | SRR25703703 | Sensitive | lineage1.1.1 | None | SRR8237322 | HR-TB | lineage2.2.1 | np | SRR5341427 | Sensitive | lineage3 | in | ERR11043259 | MDR-TB | lineage4.1.2.1 | None | ERR10225430 | HR-TB | lineage1.2.2.2 | None | SRR20969359 | Pre-XDR-TB | lineage2.2.1 | None | SRR1103376 | HR-TB | lineage4.1 | None | SRR9738539 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR998785 | MDR-TB | lineage4.1.3 | None | SAMN02231132 | Sensitive | lineage6.3.1 | None | SRR25515131 | Sensitive | lineage2.2.1 | None | ERR4423558 | HR-TB | lineage4.1.3 | None | SRR24466787 | MDR-TB | lineage4.1.2.1 | None | SRR25703765 | Sensitive | lineage1.1.1 | None | SRR998623 | Sensitive | lineage6.3.1 | None | ERR2653004 | Sensitive | lineage4.4.1.1 | None | SRR998784 | MDR-TB | lineage4.1.3 | None | ERR1873392 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29273652 | MDR-TB | lineage4.1.2.1 | None | ERR13284343 | MDR-TB | lineage4.1.3 | None | SRR25703705 | Sensitive | lineage1.1.1 | None | ERR11083089 | MDR-TB | lineage4.8 | None | SRR25703713 | Sensitive | lineage1.1.1 | None | SRR25703692 | Sensitive | lineage1.1.1 | None | SRR25703683 | Sensitive | lineage1.1.1 | None | SRR998786 | MDR-TB | lineage4.1.3 | None | ERR11081608 | MDR-TB | lineage4.1.2.1 | None | SRR25703714 | Sensitive | lineage1.1.1 | None | SRR25703679 | Sensitive | lineage1.1.1 | None | ERR4798654 | MDR-TB | lineage3 | in | SRR29274105 | MDR-TB | lineage4.1.2.1 | None | SRR998622 | Sensitive | lineage6.3.1 | None | SRR28646113 | MDR-TB | lineage4.1.2.1 | None | SRR28646099 | MDR-TB | lineage4.1.2.1 | None | SRR11662436 | MDR-TB | lineage2.2.1 | None | SRR998787 | MDR-TB | lineage4.1.3 | None | SRR28393456 | MDR-TB | lineage4.3.3 | None | SRR28646052 | MDR-TB | lineage4.1.2.1 | None | SRR25827530 | XDR-TB | lineage2.2.1;lineage4 | None | ERR11082415 | MDR-TB | lineage4.1.3 | None | ERR8975420 | HR-TB | lineage4.4.1.1 | None | ERR8975423 | HR-TB | lineage4.4.1.1 | None | ERR4423599 | HR-TB | lineage4.1.3 | None | SRR2101201 | Sensitive | lineage3 | None | ERR2512597 | Sensitive | lineage1.1.2 | gb | ERR13284737 | MDR-TB | lineage4.1.3 | None | SRR1162472 | HR-TB | lineage4.1 | None |
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