Rv3862c - p.Ala77Val
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
11 Sensitive
0 RR-TB
3 HR-TB
42 MDR-TB
191 Pre-XDR-TB
33 XDR-TB
1 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.1.2;lineage2.2.1 | 3 |
| lineage4.3.3 | 4 |
| lineage2.2.1 | 239 |
| lineage1.1.3.1;lineage2.2.1 | 1 |
| lineage1.2.2.2;lineage2.2.1 | 4 |
| lineage4.8 | 4 |
| lineage2.2.1;lineage3.1.2 | 2 |
| lineage3.1.2 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage2.2.1.2 | 1 |
| lineage4.6.2.2 | 1 |
| lineage2.2.1.1;lineage3;lineage4 | 2 |
| lineage2.2.1.1 | 2 |
| lineage4.3.4.2 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.1.1.1 | 1 |
| lineage1.1.2 | 1 |
| lineage2.2.1;lineage3 | 4 |
| lineage2.2.1;lineage3.1.2.1 | 1 |
| lineage4 | 2 |
| lineage2.2.1;lineage4.1.1.3 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.3.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 281 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR22175187 | XDR-TB | lineage1.1.2;lineage2.2.1 | None | ERR6865352 | Sensitive | lineage4.3.3 | None | ERR13262157 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266934 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827503 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267071 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827744 | Pre-XDR-TB | lineage1.1.3.1;lineage2.2.1 | None | ERR13266858 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351283 | Pre-XDR-TB | lineage1.2.2.2;lineage2.2.1 | None | ERR13262116 | Pre-XDR-TB | lineage2.2.1 | None | SRR25207094 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827764 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261395 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827299 | MDR-TB | lineage2.2.1 | None | ERR13267085 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261978 | Pre-XDR-TB | lineage2.2.1 | None | ERR11081218 | MDR-TB | lineage4.8 | None | SRR29772437 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796375 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796722 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798728 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796884 | MDR-TB | lineage2.2.1 | in | ERR4798291 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798509 | Pre-XDR-TB | lineage2.2.1;lineage3.1.2 | in | ERR4798497 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797384 | Pre-XDR-TB | lineage2.2.1 | in | SRR29772647 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799290 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799870 | MDR-TB | lineage2.2.1 | in | ERR4799945 | Pre-XDR-TB | lineage2.2.1 | in | SRR20969495 | HR-TB | lineage2.2.1 | None | ERR4800441 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798564 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797084 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799219 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799216 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799335 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799361 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797334 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799526 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797697 | MDR-TB | lineage2.2.1 | in | ERR4797712 | Pre-XDR-TB | lineage2.2.1 | in | SRR28351230 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800276 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800332 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800524 | Pre-XDR-TB | lineage2.2.1 | in | ERR11044053 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799285 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799309 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798383 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798604 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796639 | Sensitive | lineage3.1.2 | in | ERR4799887 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799909 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798759 | MDR-TB | lineage2.2.1 | in | ERR13262037 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798811 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798806 | MDR-TB | lineage2.2.1 | in | ERR4800212 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800599 | XDR-TB | lineage2.2.1 | in | SRR29772556 | Pre-XDR-TB | lineage2.2.1 | None | ERR4810473 | Pre-XDR-TB | lineage2.2.1 | cn | SRR8380939 | Pre-XDR-TB | lineage2.2.1 | in | SRR22175208 | Pre-XDR-TB | lineage2.2.1 | None | SRR21732689 | Pre-XDR-TB | lineage2.2.1 | None | SRR27069462 | Pre-XDR-TB | lineage2.2.1 | None | SRR28409566 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351359 | Pre-XDR-TB | lineage2.2.1 | None | ERR2707125 | MDR-TB | lineage4.3.4.2.1 | cd | ERR4830961 | Pre-XDR-TB | lineage2.2.1 | np | SRR25827479 | XDR-TB | lineage1.2.2.2;lineage2.2.1 | None | SRR25827620 | XDR-TB | lineage2.2.1 | None | SRR28351567 | Pre-XDR-TB | lineage2.2.1 | None | SRR28393254 | MDR-TB | lineage4.3.3 | None | ERR13266655 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827510 | XDR-TB | lineage2.2.1.2 | None | SRR25827672 | Pre-XDR-TB | lineage2.2.1 | None | SRR7517779 | Sensitive | lineage4.6.2.2 | ci | SRR25827740 | Pre-XDR-TB | lineage2.2.1.1;lineage3;lineage4 | None | ERR4800619 | MDR-TB | lineage2.2.1 | None | ERR13266931 | MDR-TB | lineage2.2.1 | None | ERR13266996 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799958 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797971 | XDR-TB | lineage2.2.1 | in | ERR4798292 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798875 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799830 | XDR-TB | lineage2.2.1 | in | ERR4800471 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799379 | Pre-XDR-TB | lineage2.2.1 | in | SRR22175197 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827436 | MDR-TB | lineage2.2.1 | None | SRR21732571 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827601 | XDR-TB | lineage2.2.1.1 | None | SRR25827677 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351362 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827632 | Pre-XDR-TB | lineage1.1.2;lineage2.2.1 | None | SRR28351159 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266747 | Pre-XDR-TB | lineage2.2.1 | None | ERR13262011 | XDR-TB | lineage2.2.1 | None | SRR28045569 | MDR-TB | lineage2.2.1 | None | ERR11044678 | Sensitive | lineage4.3.4.2 | None | ERR13267110 | Pre-XDR-TB | lineage2.2.1 | None | ERR13260968 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266649 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662366 | MDR-TB | lineage2.2.1 | None | ERR13266718 | MDR-TB | lineage2.2.1 | None | ERR13266528 | XDR-TB | lineage2.2.1 | None | ERR13266665 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266540 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261997 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827482 | XDR-TB | lineage2.2.1 | None | ERR13266598 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261342 | MDR-TB | lineage2.2.1 | None | ERR13265894 | Sensitive | lineage2.2.1 | None | SRR25827717 | Pre-XDR-TB | lineage2.2.1.1;lineage3;lineage4 | None | ERR11049819 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266929 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827435 | XDR-TB | lineage2.2.1.1 | None | ERR13262020 | XDR-TB | lineage2.2.1 | None | ERR13261499 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266857 | Pre-XDR-TB | lineage2.2.1 | None | SRR20970063 | MDR-TB | lineage2.2.1 | None | SRR22424853 | MDR-TB | lineage2.2.1 | None | SRR22175191 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827769 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SRR12634635 | HR-TB | lineage3.1.2.1 | None | SRR29231718 | MDR-TB | lineage4.3.4.2.1 | None | ERR13266477 | Pre-XDR-TB | lineage2.2.1 | None | ERR15686448 | MDR-TB | lineage4.1.1.1 | None | ERR13285162 | MDR-TB | lineage4.8 | None | ERR4798622 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797973 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796938 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797390 | MDR-TB | lineage2.2.1 | in | ERR4797015 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796999 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798396 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799212 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799187 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798457 | XDR-TB | lineage2.2.1 | in | ERR4799448 | XDR-TB | lineage2.2.1 | in | ERR4799471 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799694 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798479 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800267 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798857 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800580 | MDR-TB | lineage2.2.1 | in | ERR4799082 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799229 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799385 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799654 | MDR-TB | lineage2.2.1 | in | ERR4799637 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797896 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799158 | Pre-XDR-TB | lineage2.2.1 | in | ERR4831125 | Sensitive | lineage1.1.2 | de | ERR4799875 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799330 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796335 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798605 | XDR-TB | lineage2.2.1 | in | ERR4796746 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796793 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796984 | Pre-XDR-TB | lineage2.2.1 | in | SRR22175247 | XDR-TB | lineage2.2.1 | None | SRR25827643 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | SRR28351432 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045562 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830953 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830954 | Pre-XDR-TB | lineage2.2.1 | np | ERR4831014 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830913 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830977 | Pre-XDR-TB | lineage2.2.1 | np | SRR21576670 | MDR-TB | lineage2.2.1 | None | SRR25827745 | Pre-XDR-TB | lineage2.2.1;lineage3.1.2.1 | None | ERR4796276 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093100 | MDR-TB | lineage4 | None | SRR26399605 | Sensitive | lineage2.2.1 | None | SRR5065627 | MDR-TB | lineage2.2.1 | vn | SRR5067714 | Sensitive | lineage2.2.1 | vn | SRR20970054 | MDR-TB | lineage2.2.1 | None | ERR13261150 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796894 | XDR-TB | lineage2.2.1 | in | ERR4798617 | XDR-TB | lineage2.2.1 | in | ERR4800293 | Pre-XDR-TB | lineage2.2.1 | in | SRR25827538 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261226 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266978 | MDR-TB | lineage2.2.1 | None | ERR4797704 | MDR-TB | lineage2.2.1 | in | ERR13266504 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827886 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | ERR13266500 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798668 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266859 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093954 | MDR-TB | lineage4 | None | SRR22175239 | XDR-TB | lineage2.2.1;lineage3.1.2 | None | SRR29055622 | MDR-TB | lineage4.8 | None | SRR25827487 | XDR-TB | lineage2.2.1;lineage3 | None | ERR13266754 | MDR-TB | lineage2.2.1 | None | ERR13262234 | Sensitive | lineage4.8 | None | SRR25827351 | Pre-XDR-TB | lineage2.2.1;lineage4.1.1.3 | None | SRR25827397 | XDR-TB | lineage2.2.1 | None | ERR13262002 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827350 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | ERR4799902 | MDR-TB | lineage1.2.2.2;lineage2.2.1 | None | ERR13266981 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827884 | XDR-TB | lineage2.2.1 | None | ERR4796525 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796761 | MDR-TB | lineage2.2.1 | in | ERR4797081 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796589 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797710 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796794 | MDR-TB | lineage2.2.1 | in | ERR4796939 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798349 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798804 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797213 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798762 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799416 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799432 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797501 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799647 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797539 | MDR-TB | lineage2.2.1 | in | ERR4799674 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799988 | Pre-XDR-TB | lineage2.2.1;lineage4 | in | ERR4797858 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799152 | MDR-TB | lineage2.2.1 | in | ERR4799338 | Pre-XDR-TB | lineage2.2.1 | in | SRR14519896 | Sensitive | lineage2.2.1 | None | ERR4799001 | Pre-XDR-TB | lineage2.2.1 | in | ERR13266506 | XDR-TB | lineage2.2.1 | None | ERR4799093 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800287 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800321 | XDR-TB | lineage2.2.1 | in | ERR4800431 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798045 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800504 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798208 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799288 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798453 | MDR-TB | lineage2.2.1 | in | ERR4796434 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796702 | Pre-XDR-TB | lineage2.2.1 | in | ERR13290866 | Pre-XDR-TB | lineage2.2.1 | None | ERR13262080 | Pre-XDR-TB | lineage1.2.2.2;lineage2.2.1 | None | SRR28351319 | Pre-XDR-TB | lineage2.2.1 | None | ERR4822384 | MDR-TB | lineage2.2.1 | kg | SRR28351272 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045927 | XDR-TB | lineage2.2.1 | None | SRR28045543 | MDR-TB | lineage2.2.1 | None | SRR28351485 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045949 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351354 | XDR-TB | lineage2.2.1 | None | SRR28351615 | Pre-XDR-TB | lineage2.2.1 | None | SRR28394206 | MDR-TB | lineage4.3.3 | None | ERR4830661 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830952 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830662 | Pre-XDR-TB | lineage2.2.1 | np | ERR4831001 | Pre-XDR-TB | lineage2.2.1 | np | SRR25827704 | XDR-TB | lineage2.2.1 | None | ERR13266451 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266145 | XDR-TB | lineage2.2.1 | None | SRR29772588 | Pre-XDR-TB | lineage2.2.1 | None | ERR11049830 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266484 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797622 | Pre-XDR-TB | lineage1.1.2;lineage2.2.1 | in | ERR4799508 | XDR-TB | lineage2.2.1 | in | ERR4799900 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799681 | XDR-TB | lineage2.2.1 | in | ERR4797111 | Pre-XDR-TB | lineage2.2.1 | in | ERR9992840 | XDR-TB | lineage4.3.2.1 | None | SRR22424728 | Pre-XDR-TB | lineage2.2.1 | None | SRR21277676 | Other | lineage2.2.1 | None | SRR25207310 | Pre-XDR-TB | lineage2.2.1 | None | ERR4024956 | Sensitive | lineage4.3.3 | None | SRR15316217 | HR-TB | lineage2.2.1 | None | ERR13262062 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175193 | XDR-TB | lineage2.2.1 | None | SRR22175203 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290868 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261975 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261101 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351520 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266667 | Pre-XDR-TB | lineage2.2.1 | None |
|---|
