SRR25827435
|
XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4798349
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25207094
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799870
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR13262020
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4797971
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4800332
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827299
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827350
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4798762
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799285
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799288
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799902
|
MDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
None
|
ERR13266981
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797539
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4796884
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4831014
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR11044053
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22175247
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13290866
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351319
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799001
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827643
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR28351272
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351432
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045949
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351354
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351615
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28394206
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2707125
|
MDR-TB
|
lineage4.3.4.2.1
|
cd
|
ERR4796939
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797081
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797390
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4830662
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR25827397
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827704
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4798759
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4796276
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827510
|
XDR-TB
|
lineage2.2.1.2
|
None
|
ERR4799887
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799945
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797973
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR20970054
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800276
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799309
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796335
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796375
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261150
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266484
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22175197
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799216
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797710
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827601
|
XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4800504
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266747
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796761
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR25207310
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4024956
|
Sensitive
|
lineage4.3.3
|
None
|
ERR4799988
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR15316217
|
HR-TB
|
lineage2.2.1
|
None
|
SRR22175193
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4797384
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266528
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13266540
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799900
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827482
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13266667
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798668
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797697
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798208
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799158
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266598
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799875
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799187
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800599
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR13262157
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798604
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261342
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265894
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4798383
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266858
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351283
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
None
|
ERR13262234
|
Sensitive
|
lineage4.8
|
None
|
ERR4796794
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR13261395
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799229
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799361
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13262002
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267085
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796525
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798292
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261978
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11081218
|
MDR-TB
|
lineage4.8
|
None
|
SRR12634635
|
HR-TB
|
lineage3.1.2.1
|
None
|
SRR29231718
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR13266477
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13285162
|
MDR-TB
|
lineage4.8
|
None
|
ERR4798617
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4810473
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR29772647
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800267
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796894
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR20969495
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4799471
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830952
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR13262080
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
None
|
ERR4799654
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798509
|
Pre-XDR-TB
|
lineage2.2.1;lineage3.1.2
|
in
|
ERR4797501
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796984
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28351485
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28409566
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797015
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4822384
|
MDR-TB
|
lineage2.2.1
|
kg
|
SRR21576670
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827745
|
Pre-XDR-TB
|
lineage2.2.1;lineage3.1.2.1
|
None
|
ERR4799674
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800321
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4799526
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28393254
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29093100
|
MDR-TB
|
lineage4
|
None
|
ERR4797213
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266451
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797622
|
Pre-XDR-TB
|
lineage1.1.2;lineage2.2.1
|
in
|
SRR29772588
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7517779
|
Sensitive
|
lineage4.6.2.2
|
ci
|
ERR4800441
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799448
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR11049830
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798457
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4799290
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800471
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830977
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR25827436
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799385
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827677
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798605
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR8380939
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827632
|
Pre-XDR-TB
|
lineage1.1.2;lineage2.2.1
|
None
|
ERR4798497
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR21277676
|
Other
|
lineage2.2.1
|
None
|
ERR4799909
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830954
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR28351159
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799338
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28045569
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798453
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798811
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13262062
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261226
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798396
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266978
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796589
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800431
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266504
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992840
|
XDR-TB
|
lineage4.3.2.1
|
None
|
ERR13290868
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799637
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796793
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827886
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR13261975
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798728
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266500
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796999
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266934
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093954
|
MDR-TB
|
lineage4
|
None
|
SRR22175239
|
XDR-TB
|
lineage2.2.1;lineage3.1.2
|
None
|
ERR4797111
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827503
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797704
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR29055622
|
MDR-TB
|
lineage4.8
|
None
|
SRR25827487
|
XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4830961
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4831001
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR13266929
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261499
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798479
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266857
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR20970063
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22424853
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798564
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175191
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799694
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799219
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827769
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.5
|
None
|
ERR4797712
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29772437
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827884
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4798806
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799432
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799330
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799335
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR14519896
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13266506
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351230
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13262037
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772556
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800293
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796702
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796746
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800524
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799152
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR22175208
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21732689
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR27069462
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045927
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28045543
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28045562
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351359
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796434
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827479
|
XDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
None
|
SRR25827620
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351567
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266655
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5067714
|
Sensitive
|
lineage2.2.1
|
vn
|
ERR4798622
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799212
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799508
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR25827672
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799416
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4831125
|
Sensitive
|
lineage1.1.2
|
de
|
SRR26399605
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13266145
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827740
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage3;lineage4
|
None
|
ERR4796639
|
Sensitive
|
lineage3.1.2
|
in
|
ERR4797858
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800619
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799093
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827351
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.1.1.3
|
None
|
ERR4799830
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4796938
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266931
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830913
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR13266996
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799958
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796722
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22424728
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21732571
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351362
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827538
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5065627
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR4797334
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797896
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13262011
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827764
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22175203
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11044678
|
Sensitive
|
lineage4.3.4.2
|
None
|
ERR4798804
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13267110
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13260968
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266649
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662366
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266718
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799681
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR13266665
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261997
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261101
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351520
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798875
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799379
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799647
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175187
|
XDR-TB
|
lineage1.1.2;lineage2.2.1
|
None
|
ERR13266859
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6865352
|
Sensitive
|
lineage4.3.3
|
None
|
ERR4830953
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR13267071
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799082
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800212
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827744
|
Pre-XDR-TB
|
lineage1.1.3.1;lineage2.2.1
|
None
|
SRR25827717
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage3;lineage4
|
None
|
ERR4798291
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800580
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR13266754
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830661
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11049819
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13262116
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798045
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|