Rv3919c - c.115delC
Drug resistance types
0 Sensitive
4 RR-TB
57 HR-TB
101 MDR-TB
38 Pre-XDR-TB
1 XDR-TB
146 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.6.1 | 1 |
| lineage1.2.2.2 | 14 |
| lineage4.2.2.2 | 10 |
| lineage3.1.2 | 9 |
| lineage2.2.1 | 11 |
| lineage3 | 68 |
| 2 | |
| lineage4.1.2.1 | 46 |
| lineage2.2.1.1 | 7 |
| lineage4.8 | 18 |
| lineage1.2.1.2.1 | 9 |
| lineage5.1.4 | 4 |
| lineage4.3.4.1 | 1 |
| lineage1.2.2.1 | 3 |
| lineage4.4.1.1 | 8 |
| lineage1.1.2 | 18 |
| lineage2.2.2 | 10 |
| lineage4.1.1.3 | 13 |
| lineage1.1.3.1 | 8 |
| lineage4.1.2 | 3 |
| lineage3.1.2.1 | 4 |
| lineage4.6.1.2 | 3 |
| lineage1.1.1.1 | 13 |
| lineage3.1.1 | 5 |
| lineage1.1.1 | 3 |
| lineage4.5 | 9 |
| lineage3.1 | 2 |
| lineage4.4.1.2 | 1 |
| lineage2.1 | 1 |
| lineage4.9 | 5 |
| lineage4 | 6 |
| lineage4.1.1.2;lineage3 | 1 |
| lineage4.4.2 | 3 |
| lineage4.3.3 | 1 |
| lineage4.2.2 | 4 |
| lineage4.4 | 2 |
| lineage4.1.2.1;lineage2.2.1 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4.1.1.1 | 1 |
| lineage1.2.1.2 | 1 |
| lineage4.1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.6.2.2 | 6 |
| lineage4.7 | 1 |
| lineage1.1.3.2 | 1 |
| lineage4.1.3 | 1 |
| lineage3.1.3 | 1 |
| lineage4.1.4 | 2 |
| lineage1.2.1.1 | 1 |
| lineage1.1.3.3 | 1 |
| lineage4.8;lineage1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 347 |
Geographic prevalence
Country level data for this variant is available for 295 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR1199016 | Other | lineage4.6.1 | ug | ERR4796557 | MDR-TB | lineage1.2.2.2 | in | ERR3275205 | Other | lineage4.2.2.2 | nl | ERR4819097 | HR-TB | lineage1.2.2.2 | gb | ERR1034690 | MDR-TB | lineage3.1.2 | in | SRR5067531 | Other | lineage2.2.1 | vn | ERR4822010 | Other | lineage3 | gb | SRR5818469 | Other | None | ERR4813269 | Other | lineage4.1.2.1 | pe | ERR4797726 | MDR-TB | lineage3 | in | ERR4831785 | HR-TB | lineage2.2.1.1 | vn | ERR2510634 | MDR-TB | lineage3 | None | ERR552419 | Other | lineage4.8 | de | ERR2513535 | Other | lineage4.1.2.1 | gb | ERR2513803 | Other | lineage3 | gb | ERR1023302 | MDR-TB | lineage3 | None | ERR4799105 | Other | lineage1.2.2.2 | in | ERR3256230 | Other | lineage1.2.1.2.1 | ph | SAMEA2535205 | MDR-TB | lineage4.8 | uz | ERR552589 | Other | lineage5.1.4 | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | ERR4798859 | HR-TB | lineage1.2.2.1 | in | SRR7517678 | MDR-TB | lineage4.4.1.1 | cd | ERR4816541 | HR-TB | lineage1.1.2 | gb | ERR552562 | Other | lineage1.2.2.1 | None | ERR779920 | MDR-TB | lineage4.1.2.1 | pe | SRR5074122 | HR-TB | lineage2.2.2 | vn | ERR4829537 | Other | lineage4.8 | it | ERR2515872 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR4820568 | Other | lineage1.1.3.1 | gb | ERR2510419 | Pre-XDR-TB | lineage4.2.2.2 | pk | ERR4799708 | MDR-TB | lineage3 | in | ERR4830743 | Pre-XDR-TB | lineage4.1.2 | dz | ERR4797962 | Pre-XDR-TB | lineage4.1.1.3 | in | ERR4830536 | Other | lineage4.1.1.3 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR4796895 | MDR-TB | lineage3 | in | ERR4797290 | Other | lineage4.1.2.1 | in | ERR2446495 | Other | lineage3.1.2.1 | nl | ERR751722 | Other | lineage1.2.1.2.1 | th | SRR5073750 | HR-TB | lineage2.2.1.1 | vn | ERR4813397 | MDR-TB | lineage4.1.2.1 | pe | ERR2199948 | Other | lineage4.1.1.3 | de | ERR1199111 | MDR-TB | lineage4.6.1.2 | cd | ERR2513832 | Other | lineage3 | gb | ERR3335730 | HR-TB | lineage1.2.2.2 | pk | ERR718362 | Other | lineage1.2.1.2.1 | th | ERR2512959 | Other | lineage1.1.3.1 | gb | ERR4831728 | HR-TB | lineage1.1.1.1 | vn | ERR7911285 | MDR-TB | lineage1.1.1.1 | vn | ERR3275864 | HR-TB | lineage3 | nl | ERR2517188 | MDR-TB | lineage3.1.1 | nl | SRR2100170 | HR-TB | lineage1.1.3.1 | None | SAMN02586016 | MDR-TB | lineage4.4.1.1 | za | ERR038755 | MDR-TB | lineage4.1.1.3 | ug | ERR2514512 | Other | lineage4.8 | gb | SRR5067668 | Other | lineage1.1.1.1 | vn | ERR4829144 | Pre-XDR-TB | lineage3 | pk | ERR2512952 | Other | lineage4.4.1.1 | gb | ERR4799058 | MDR-TB | lineage3.1.2 | in | ERR4799836 | Other | lineage1.1.2 | in | SRR7517769 | MDR-TB | lineage4.1.2.1 | pe | ERR4813179 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR1034933 | Other | lineage3 | za | ERR767979 | Other | lineage1.1.1 | th | SRR5073861 | HR-TB | lineage1.1.1.1 | vn | ERR4812594 | MDR-TB | lineage4.1.2.1 | pe | ERR2514216 | Other | lineage3 | gb | SAMN02585966 | Pre-XDR-TB | lineage4.4.1.1 | za | ERR751577 | MDR-TB | lineage4.1.2.1 | pe | ERR775306 | Other | lineage4.1.2.1 | pe | ERR1213854 | HR-TB | lineage4.5 | kr | ERR4797739 | Pre-XDR-TB | lineage3.1 | in | SRR5065464 | Other | lineage1.1.1.1 | vn | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | ERR4798367 | Other | lineage4.8 | in | SAMN02403511 | MDR-TB | lineage4.1.1.3 | za | ERR2514950 | Other | lineage3 | gb | ERR4811940 | Other | lineage4.4.1.2 | pe | SRR7585420 | Pre-XDR-TB | lineage3 | None | ERR502927 | MDR-TB | lineage2.2.1 | None | ERR2517438 | Other | lineage3 | nl | ERR4831627 | MDR-TB | lineage4.5 | vn | ERR4828176 | Other | lineage2.2.1 | vn | SRR5073602 | Other | lineage2.1 | vn | ERR2514038 | Other | lineage3 | gb | SAMN02584607 | Other | lineage2.2.1 | md | SAMN02350423 | Pre-XDR-TB | lineage4.4.1.1 | za | ERR4796331 | HR-TB | lineage4.9 | in | ERR2510166 | HR-TB | lineage4 | pe | DRR184655 | MDR-TB | lineage1.1.1.1 | vn | ERR1034655 | MDR-TB | lineage4 | bg | SRR2100892 | HR-TB | lineage3 | None | ERR4815688 | MDR-TB | lineage1.1.2 | gb | ERR2503490 | Other | lineage4.1.2.1 | fi | ERR4829931 | Pre-XDR-TB | lineage4.1.1.2;lineage3 | None | SRR6046288 | Other | lineage3 | gb | SRR5073583 | HR-TB | lineage2.2.1.1 | vn | ERR2513878 | Other | lineage4.2.2.2 | gb | ERR4796710 | HR-TB | lineage3.1.2 | in | ERR4815078 | Other | lineage3 | gb | ERR2514522 | Other | lineage3 | gb | ERR1213859 | MDR-TB | lineage2.2.2 | kr | ERR2514935 | HR-TB | lineage3 | gb | ERR4810984 | MDR-TB | lineage4.4.2 | cn | ERR4819512 | MDR-TB | lineage1.1.2 | gb | ERR3275207 | Other | lineage3.1.2.1 | nl | SAMN02403510 | Pre-XDR-TB | lineage4.1.1.3 | za | SAMN02053767 | HR-TB | lineage4.1.1.3 | za | ERR751984 | Other | lineage1.2.1.2.1 | th | ERR2510418 | Pre-XDR-TB | lineage3 | pk | ERR4831411 | Other | lineage3 | de | ERR5918046 | XDR-TB | lineage4.1.1.3 | za | SRR5818673 | Other | lineage4.2.2.2 | dj | ERR4796997 | MDR-TB | lineage3 | in | ERR2516819 | MDR-TB | lineage1.2.2.2 | gb | ERR552590 | Other | lineage5.1.4 | cg | SRR5818411 | MDR-TB | None | SRR5073910 | HR-TB | lineage4.4.2 | vn | ERR4830201 | Other | lineage2.2.2 | vn | SRR6397955 | Other | lineage4.1.2.1 | ca | ERR978669 | Other | lineage4.8 | gl | SRR2100495 | Other | lineage3 | None | ERR4815908 | HR-TB | lineage3 | gb | ERR4831515 | HR-TB | lineage3 | pk | ERR2707156 | MDR-TB | lineage4.3.3 | cd | ERR552588 | Other | lineage5.1.4 | None | ERR7911495 | MDR-TB | lineage2.2.2 | vn | ERR4828741 | Other | lineage1.1.1 | vn | SRR1723425 | MDR-TB | lineage2.2.2 | cn | ERR4818255 | HR-TB | lineage3 | None | ERR2510129 | MDR-TB | lineage4.1.2.1 | pe | SRR5709841 | MDR-TB | lineage4.2.2 | th | ERR3335746 | Other | lineage1.2.2.2 | pk | SRR5067426 | Other | lineage2.2.1 | vn | SRR2100403 | Other | lineage1.1.2 | None | ERR4813359 | MDR-TB | lineage4.1.2.1 | None | SRR5067242 | HR-TB | lineage1.1.1.1 | vn | ERR2517109 | Other | lineage3 | gb | ERR4818612 | HR-TB | lineage4.4 | None | ERR1213882 | Other | lineage4.4.1.1 | de | ERR2510163 | HR-TB | lineage4.1.2.1 | pe | ERR4817022 | HR-TB | lineage1.1.2 | gb | ERR4811313 | MDR-TB | lineage4.2.2 | cn | ERR2677455 | Pre-XDR-TB | lineage4.1.2.1;lineage2.2.1 | de | ERR2516698 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR2446262 | Other | lineage4.2.2.2 | nl | ERR4819109 | Pre-XDR-TB | lineage4 | gb | SAMN02380989 | MDR-TB | lineage3.1.1 | ug | ERR553308 | Other | lineage1.1.2 | de | ERR2516677 | Other | lineage4.1.1.3 | pe | ERR3275183 | Other | lineage1.1.2 | nl | ERR2517513 | Other | lineage3.1.2.1 | nl | ERR4829699 | HR-TB | lineage4.1.2.1 | it | ERR4813285 | MDR-TB | lineage4.1.2.1 | pe | ERR2513019 | Other | lineage3 | gb | ERR067661 | HR-TB | lineage4.2.1.1 | ru | ERR1034606 | MDR-TB | lineage1.1.2 | pk | ERR4829392 | Pre-XDR-TB | lineage4.9 | it | ERR4800541 | HR-TB | lineage4.5 | in | ERR1034834 | MDR-TB | lineage4.1.2.1 | pt | ERR4821631 | Other | lineage1.1.2 | None | ERR2517147 | Other | lineage4.2.2.2 | nl | ERR4796871 | MDR-TB | lineage3 | in | ERR4817824 | Other | lineage1.1.3.1 | gb | ERR4798565 | MDR-TB | lineage3.1.2 | in | SRR8651597 | Pre-XDR-TB | lineage2.2.1 | cn | ERR2516405 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR2510317 | MDR-TB | lineage3 | pk | ERR4829956 | Pre-XDR-TB | lineage4.1.2.1 | None | SAMN02380991 | Other | lineage3 | ug | SRR2099957 | HR-TB | lineage1.1.3.1 | None | ERR1213848 | Other | lineage4 | kr | ERR2513789 | HR-TB | lineage4.9 | gb | SRR2100228 | MDR-TB | lineage3 | None | ERR4828974 | Pre-XDR-TB | lineage4.9 | it | ERR4830281 | Other | lineage4.1.1.1 | vn | ERR552563 | Other | lineage1.2.2.1 | None | ERR2514125 | Other | lineage3 | None | SRR1166228 | MDR-TB | lineage4.8 | ro | ERR4831891 | HR-TB | lineage2.2.1.1 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | ERR1465894 | Other | lineage4.8 | ch | ERR752289 | MDR-TB | lineage1.1.1 | th | ERR4817240 | Other | lineage1.2.1.2 | gb | SAMN02599059 | Other | lineage1.2.2.2 | in | ERR4828401 | Other | lineage1.1.1.1 | vn | ERR2510556 | MDR-TB | lineage3 | pk | ERR3287592 | MDR-TB | lineage4.8 | None | SRR8380876 | MDR-TB | lineage1.1.2 | in | ERR4831454 | MDR-TB | lineage1.1.2 | None | ERR4813880 | Other | lineage4.8 | None | SRR5065633 | Other | lineage1.2.1.2.1 | vn | ERR1035227 | Other | lineage4.8 | pt | ERR4819778 | Other | lineage4.8 | None | ERR2514227 | Other | lineage3 | None | ERR7911476 | MDR-TB | lineage2.2.2 | vn | ERR751433 | HR-TB | lineage4 | pe | ERR4800273 | Other | lineage3.1.2 | in | ERR2512638 | Other | lineage3 | gb | ERR2510400 | Pre-XDR-TB | lineage4.2.2.2 | pk | SRR6045691 | Other | lineage1.2.1.2.1 | gb | ERR2510635 | MDR-TB | lineage3 | pk | ERR2516972 | MDR-TB | lineage4.2.2.2 | gb | ERR4830138 | HR-TB | lineage4.8 | None | ERR2677396 | Pre-XDR-TB | lineage4.1.2.1 | de | ERR553226 | MDR-TB | lineage4.1 | None | ERR2516597 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR4797869 | Pre-XDR-TB | lineage1.2.2.2 | in | ERR038738 | RR-TB | lineage4.6.1.1 | ug | SAMN02414893 | MDR-TB | lineage3 | se | ERR2513828 | Other | lineage1.1.2 | gb | ERR751473 | HR-TB | lineage4.1.2.1 | pe | ERR3275778 | Other | lineage3 | nl | ERR4799653 | MDR-TB | lineage3 | in | ERR4797274 | HR-TB | lineage4.4 | in | ERR4798718 | Other | lineage3.1.2 | in | ERR4829984 | MDR-TB | lineage4.6.2.2 | None | ERR2516466 | RR-TB | lineage3.1.1 | nl | ERR4812188 | Other | lineage4.7 | pe | SRR2101373 | MDR-TB | lineage4.1.2.1 | None | SRR5073772 | HR-TB | lineage2.2.1.1 | vn | ERR2514305 | Other | lineage3 | None | ERR2510352 | MDR-TB | lineage4.2.2.2 | pk | SRR8380928 | MDR-TB | lineage1.1.2 | in | ERR2510164 | Other | lineage4.1.2.1 | pe | ERR2512627 | Other | lineage4.8 | gb | ERR4796467 | Other | lineage3 | in | ERR4809071 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2510260 | Pre-XDR-TB | lineage3 | pk | SRR5818642 | MDR-TB | lineage1.2.2.2 | dj | ERR4815740 | HR-TB | lineage1.1.3.2 | gb | ERR3287773 | MDR-TB | lineage4.1.2.1 | pe | SRR1723424 | HR-TB | lineage2.2.2 | cn | SRR5073857 | Other | lineage1.1.1.1 | vn | ERR4832030 | MDR-TB | lineage4.5 | vn | ERR1034983 | Other | lineage3 | za | ERR2516361 | MDR-TB | lineage3.1.1 | be | ERR2510787 | Other | lineage1.2.2.2 | it | SRR6046179 | HR-TB | lineage4.1.3 | None | ERR2516988 | MDR-TB | lineage3.1.2 | gb | SRR6397720 | Other | lineage4.1.2.1 | ca | SRR6397820 | Other | lineage4.1.2.1 | ca | SRR6824480 | MDR-TB | lineage4.2.2 | cn | ERR1199130 | MDR-TB | lineage4.6.1.2 | None | ERR751422 | MDR-TB | lineage4.1.2.1 | pe | ERR4799086 | MDR-TB | lineage3.1.2 | in | ERR2503408 | Other | lineage4.6.2.2 | fi | ERR751443 | MDR-TB | lineage4.1.2.1 | pe | ERR4829989 | Other | lineage4.6.2.2 | None | ERR2513196 | Other | lineage3 | gb | ERR4799687 | MDR-TB | lineage3 | in | ERR4831852 | HR-TB | lineage4.5 | vn | SAMEA2533902 | RR-TB | lineage3.1.3 | uz | ERR4818209 | Other | lineage4.1.2.1 | gb | SAMN02053758 | Pre-XDR-TB | lineage4.4.1.1 | za | ERR2510296 | Pre-XDR-TB | lineage3 | pk | ERR4796676 | HR-TB | lineage3.1 | in | SRR5065424 | Other | lineage2.2.1 | vn | ERR4800014 | HR-TB | lineage3 | in | ERR4796859 | Other | lineage4.1.2.1 | in | ERR4831843 | MDR-TB | lineage2.2.1 | vn | ERR4820696 | Other | lineage4.2.2.2 | gb | ERR2516451 | MDR-TB | lineage4.1.2.1 | pe | ERR4818421 | Other | lineage3 | gb | SRR6325454 | Other | lineage4.1.2.1 | us | ERR4815526 | Other | lineage4.8 | gb | SRR5067468 | Other | lineage1.1.1.1 | vn | SRR2100189 | HR-TB | lineage1.1.3.1 | None | ERR4815173 | Other | lineage1.1.3.1 | gb | SAMEA2534084 | RR-TB | lineage4.8 | uz | ERR1035133 | HR-TB | lineage2.2.1.1 | vn | ERR2516531 | MDR-TB | lineage4.1.2.1 | pe | ERR234229 | Other | lineage4.5 | cn | ERR2199753 | Other | lineage4.1.4 | de | SRR6153169 | Other | lineage1.2.1.2.1 | ca | ERR2503563 | Other | lineage4.1.1.3 | fi | ERR7910892 | MDR-TB | lineage4.1.2.1 | pe | ERR2510347 | MDR-TB | lineage3 | pk | ERR4799897 | MDR-TB | lineage3 | in | SRR5341388 | Other | lineage3 | in | ERR1023384 | Other | lineage1.2.2.2 | None | ERR2706948 | MDR-TB | lineage4.6.1.2 | cd | SRR6152942 | HR-TB | lineage1.2.1.2.1 | ca | ERR2510191 | MDR-TB | lineage4.1.2.1 | pe | ERR779924 | MDR-TB | lineage4.1.2.1 | pe | ERR4830196 | Other | lineage1.1.1.1 | vn | ERR4828143 | Other | lineage2.2.1 | vn | ERR4831628 | MDR-TB | lineage4.1.2 | vn | ERR2446298 | Other | lineage1.1.2 | nl | ERR4799204 | Other | lineage1.1.2 | in | ERR4831945 | HR-TB | lineage4.5 | None | SRR6824472 | MDR-TB | lineage2.2.2 | cn | ERR4813499 | HR-TB | lineage4.1.2.1 | pe | SRR5341420 | MDR-TB | lineage1.1.2 | in | SRR5341284 | HR-TB | lineage4.5 | in | ERR4799947 | Other | lineage3 | in | ERR2515615 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR718269 | MDR-TB | lineage4.4.2 | th | ERR4798194 | MDR-TB | lineage1.2.2.2 | in | SRR2100800 | Other | lineage3 | None | SRR5073612 | HR-TB | lineage2.2.1.1 | vn | ERR2514401 | Other | lineage3 | gb | ERR4828790 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR400381 | Other | lineage1.1.3.1 | None | ERR2041727 | MDR-TB | lineage4.4.1.1 | rs | ERR4814286 | HR-TB | lineage1.2.1.1 | gb | SRR6046756 | Other | lineage1.2.1.2.1 | gb | ERR751632 | MDR-TB | lineage4.1.2.1 | pe | SRR2100814 | Other | lineage4.1.2.1 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | SAMN02414967 | MDR-TB | lineage2.2.1 | se | ERR2510642 | Pre-XDR-TB | lineage3 | pk | ERR4796958 | Other | lineage1.1.3.3 | in | SAMN02599057 | Other | lineage1.2.2.2 | in | ERR400478 | Other | lineage3 | gb | SRR5073706 | Other | lineage1.1.1.1 | vn | SAMN02414976 | MDR-TB | lineage3.1.1 | se | SRR5073947 | HR-TB | lineage4.5 | vn | ERR4818200 | Other | lineage3.1.2 | gb | ERR4799263 | Pre-XDR-TB | lineage4.1.2.1 | in | ERR2513485 | Other | lineage3 | None | ERR4828815 | Pre-XDR-TB | lineage4.1.2 | None | ERR2510447 | MDR-TB | lineage3 | pk | ERR4796876 | MDR-TB | lineage3.1.2.1 | in | ERR2516434 | MDR-TB | lineage4.1.4 | pe | SAMN02053786 | Other | lineage4.1.2.1 | za | ERR040141 | MDR-TB | lineage3 | ug | ERR038280 | Other | lineage3 | gb | SRR671771 | MDR-TB | lineage2.2.1 | cn | ERR4822368 | MDR-TB | lineage4.9 | None | ERR751518 | MDR-TB | lineage4.1.2.1 | pe | ERR2514896 | Other | lineage3 | gb | ERR4828844 | Pre-XDR-TB | lineage4 | None | ERR2446479 | Other | lineage3 | nl | ERR275236 | Other | lineage4.8 | pt | ERR702415 | Other | lineage5.1.4 | gh | ERR1035091 | Other | lineage4.8;lineage1.1.1 | vn | ERR4800007 | Other | lineage1.2.2.2 | in | ERR3275210 | Other | lineage3 | nl | ERR2517330 | Other | lineage1.1.2 | nl | SRR5074083 | HR-TB | lineage1.1.1.1 | vn | ERR2677391 | MDR-TB | lineage4.6.2.2 | de | ERR2516448 | MDR-TB | lineage4.6.2.2 | nl | ERR4797982 | Other | lineage3 | in | ERR4810979 | Pre-XDR-TB | lineage4.2.2 | cn | ERR228065 | Other | lineage4.8 | ru |
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