Run ID: ERR024337
Sample name:
Date: 31-03-2023 08:09:27
Number of reads: 1142065
Percentage reads mapped: 98.07
Strain: lineage4.3.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.2 | Euro-American (LAM) | LAM3 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoB | 759707 | c.-100C>A | upstream_gene_variant | 0.17 |
rpoB | 761075 | p.Glu423Asp | missense_variant | 0.11 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
rpoC | 765160 | c.1791C>A | synonymous_variant | 0.11 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303016 | p.Val29Gly | missense_variant | 0.14 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472337 | n.492C>T | non_coding_transcript_exon_variant | 1.0 |
inhA | 1674365 | p.Pro55Arg | missense_variant | 0.11 |
inhA | 1674952 | p.Pro251Ala | missense_variant | 0.23 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518144 | c.29dupG | frameshift_variant | 0.12 |
eis | 2715424 | c.-92C>G | upstream_gene_variant | 0.31 |
ahpC | 2726338 | p.Val49Gly | missense_variant | 0.47 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
thyA | 3074657 | c.-186C>G | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiB | 3642772 | p.Asp413Ala | missense_variant | 0.33 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
embC | 4239842 | c.-21C>A | upstream_gene_variant | 0.18 |
embC | 4240559 | p.Ala233Ser | missense_variant | 0.2 |
embC | 4240646 | p.Phe262Val | missense_variant | 0.21 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242883 | c.-350C>G | upstream_gene_variant | 1.0 |
embA | 4243705 | p.Gly158Asp | missense_variant | 1.0 |
embA | 4245543 | p.Gly771Cys | missense_variant | 0.15 |
embB | 4248706 | c.2193G>A | synonymous_variant | 1.0 |
ubiA | 4269529 | p.Ala102Gly | missense_variant | 0.32 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407644 | p.Arg187Trp | missense_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |