Run ID: ERR028606
Sample name:
Date: 31-03-2023 08:24:09
Number of reads: 781944
Percentage reads mapped: 99.41
Strain: lineage4.1.2
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4.1 | Euro-American | T;X;H | None | 0.18 |
lineage4.1.2 | Euro-American | T;H | None | 0.05 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472362 | n.517C>T | non_coding_transcript_exon_variant | 0.18 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 0.29 |
mshA | 575679 | p.Asn111Ser | missense_variant | 0.5 |
mshA | 575907 | p.Ala187Val | missense_variant | 0.4 |
mshA | 576077 | c.730C>T | synonymous_variant | 0.6 |
ccsA | 620625 | p.Ile245Met | missense_variant | 0.29 |
rpoB | 760115 | c.309C>T | synonymous_variant | 0.14 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.25 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 0.43 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 0.44 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303174 | p.Leu82Val | missense_variant | 0.29 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473064 | n.1219A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474007 | n.350A>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475363 | n.1706C>A | non_coding_transcript_exon_variant | 0.5 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 0.38 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 0.38 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 0.57 |
PPE35 | 2169320 | p.Leu431Phe | missense_variant | 0.27 |
PPE35 | 2169866 | c.747G>C | synonymous_variant | 0.44 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 0.29 |
ahpC | 2726338 | p.Val49Gly | missense_variant | 0.47 |
thyA | 3073806 | c.666C>G | synonymous_variant | 0.3 |
ald | 3086742 | c.-78A>C | upstream_gene_variant | 0.29 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448608 | c.105G>A | synonymous_variant | 0.23 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 0.25 |
Rv3236c | 3613184 | c.-68C>T | upstream_gene_variant | 0.2 |
fbiB | 3641955 | p.Gly141Arg | missense_variant | 0.5 |
embC | 4239842 | c.-21C>A | upstream_gene_variant | 0.33 |
embC | 4242425 | p.Arg855Gly | missense_variant | 0.5 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 0.2 |
embA | 4243346 | c.114A>G | synonymous_variant | 0.2 |
embA | 4243419 | p.Val63Ile | missense_variant | 0.12 |
embA | 4243460 | c.228C>T | synonymous_variant | 0.3 |
embB | 4246941 | p.Pro143Leu | missense_variant | 0.25 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 0.62 |
ubiA | 4269529 | p.Ala102Gly | missense_variant | 0.29 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 0.23 |
gid | 4407927 | p.Glu92Asp | missense_variant | 0.33 |