Run ID: ERR036204
Sample name:
Date: 31-03-2023 08:29:43
Number of reads: 3702283
Percentage reads mapped: 99.4
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6247 | c.1008G>A | synonymous_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
rpoB | 759831 | p.Thr9Pro | missense_variant | 0.36 |
rpoC | 762836 | c.-534C>G | upstream_gene_variant | 0.39 |
rpoC | 767305 | p.Tyr1312* | stop_gained | 0.32 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777399 | p.Thr361Arg | missense_variant | 0.14 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475363 | n.1706C>A | non_coding_transcript_exon_variant | 0.24 |
inhA | 1674892 | p.Asn231Asp | missense_variant | 0.22 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168149 | p.Pro822Ser | missense_variant | 1.0 |
PPE35 | 2169320 | p.Leu431Phe | missense_variant | 0.22 |
PPE35 | 2169866 | c.747G>C | synonymous_variant | 0.35 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714366 | p.Val323Leu | missense_variant | 0.13 |
eis | 2715586 | c.-254G>C | upstream_gene_variant | 0.67 |
Rv2752c | 3064741 | p.Gly484Ala | missense_variant | 0.27 |
thyA | 3073806 | c.666C>G | synonymous_variant | 0.26 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
fprA | 3474601 | p.Arg199Gly | missense_variant | 0.32 |
rpoA | 3878238 | p.Asp90Glu | missense_variant | 0.21 |
clpC1 | 4039932 | p.Gly258Val | missense_variant | 0.14 |
embC | 4239842 | c.-21C>A | upstream_gene_variant | 0.19 |
embC | 4242425 | p.Arg855Gly | missense_variant | 0.19 |
embC | 4242476 | p.Pro872Ala | missense_variant | 0.24 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.32 |
embC | 4242827 | p.Leu989Val | missense_variant | 0.19 |
aftB | 4267880 | c.957C>T | synonymous_variant | 1.0 |
ethA | 4327672 | c.-199G>A | upstream_gene_variant | 0.2 |
ethR | 4327974 | p.Met142Ile | missense_variant | 1.0 |
ethR | 4327975 | p.Gln143Lys | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448505 | c.3_*1408del | frameshift_variant&start_lost&splice_region_variant | 1.0 |