Run ID: ERR036246
Sample name:
Date: 31-03-2023 08:31:54
Number of reads: 6712122
Percentage reads mapped: 99.61
Strain: lineage4.3.4.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.4 | Euro-American (LAM) | LAM | RD174 | 1.0 |
lineage4.3.4.2 | Euro-American (LAM) | LAM1;LAM4;LAM11 | RD174 | 1.0 |
lineage4.3.4.2.1 | Euro-American (LAM) | LAM11 | RD174 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6140 | p.Val301Leu | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 762836 | c.-534C>G | upstream_gene_variant | 0.24 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
rpoC | 767083 | c.3714C>T | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
atpE | 1461019 | c.-26C>A | upstream_gene_variant | 0.2 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475363 | n.1706C>A | non_coding_transcript_exon_variant | 0.24 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102891 | p.Phe51Ser | missense_variant | 0.26 |
PPE35 | 2169866 | c.747G>C | synonymous_variant | 0.31 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714366 | p.Val323Leu | missense_variant | 0.38 |
eis | 2715586 | c.-254G>C | upstream_gene_variant | 0.5 |
ribD | 2987307 | p.Ala157Pro | missense_variant | 0.19 |
Rv2752c | 3064552 | p.Arg547Pro | missense_variant | 0.19 |
Rv2752c | 3064741 | p.Gly484Ala | missense_variant | 0.24 |
thyA | 3073806 | c.666C>G | synonymous_variant | 0.15 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612009 | p.Ala370Thr | missense_variant | 0.98 |
fbiB | 3641955 | p.Gly141Arg | missense_variant | 0.25 |
alr | 3840719 | c.702A>G | synonymous_variant | 1.0 |
alr | 3840869 | c.552C>G | synonymous_variant | 1.0 |
alr | 3841387 | p.Asn12His | missense_variant | 1.0 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
clpC1 | 4038857 | c.1848C>A | synonymous_variant | 0.2 |
clpC1 | 4039363 | p.Ala448Pro | missense_variant | 0.29 |
clpC1 | 4039932 | p.Gly258Val | missense_variant | 0.23 |
embC | 4239842 | c.-21C>A | upstream_gene_variant | 0.18 |
embC | 4242425 | p.Arg855Gly | missense_variant | 0.19 |
embC | 4242476 | p.Pro872Ala | missense_variant | 0.23 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.48 |
embC | 4242827 | p.Leu989Val | missense_variant | 0.26 |
ubiA | 4269529 | p.Ala102Gly | missense_variant | 0.19 |
ethA | 4327672 | c.-199G>A | upstream_gene_variant | 0.26 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |