Run ID: ERR036247
Sample name:
Date: 31-03-2023 08:31:36
Number of reads: 5379333
Percentage reads mapped: 95.36
Strain: lineage4.3.4.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.4 | Euro-American (LAM) | LAM | RD174 | 1.0 |
lineage4.3.4.2 | Euro-American (LAM) | LAM1;LAM4;LAM11 | RD174 | 1.0 |
lineage4.3.4.2.1 | Euro-American (LAM) | LAM11 | RD174 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6140 | p.Val301Leu | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 762836 | c.-534C>G | upstream_gene_variant | 0.48 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777399 | p.Thr361Arg | missense_variant | 0.26 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
atpE | 1461019 | c.-26C>A | upstream_gene_variant | 0.18 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472138 | n.293C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472147 | n.302G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472151 | n.306C>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472708 | n.863T>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472786 | n.941C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472803 | n.958T>C | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472953 | n.1108G>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472982 | n.1137G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.24 |
rrs | 1473001 | n.1156G>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1473005 | n.1160C>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1473009 | n.1164T>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.1 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.1 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474380 | n.723G>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475363 | n.1706C>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475858 | n.2201T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475866 | n.2209T>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475869 | n.2212C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476229 | n.2572C>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476251 | n.2594T>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476353 | n.2696G>A | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476359 | n.2702C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.39 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.48 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476592 | n.2935G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476605 | n.2948C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476608 | n.2951C>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476614 | n.2957A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476629 | n.2972C>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476637 | n.2980C>A | non_coding_transcript_exon_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169320 | p.Leu431Phe | missense_variant | 0.18 |
PPE35 | 2169866 | c.747G>C | synonymous_variant | 0.26 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714366 | p.Val323Leu | missense_variant | 0.15 |
folC | 2747263 | c.336C>A | synonymous_variant | 0.2 |
pepQ | 2859381 | c.1038C>G | synonymous_variant | 0.21 |
ribD | 2987307 | p.Ala157Pro | missense_variant | 0.18 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474601 | p.Arg199Gly | missense_variant | 0.26 |
Rv3236c | 3612009 | p.Ala370Thr | missense_variant | 1.0 |
fbiB | 3642734 | c.1200G>C | synonymous_variant | 0.17 |
alr | 3840719 | c.702A>G | synonymous_variant | 1.0 |
rpoA | 3878238 | p.Asp90Glu | missense_variant | 0.2 |
ddn | 3987013 | p.Gly57Ala | missense_variant | 0.33 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
clpC1 | 4038857 | c.1848C>A | synonymous_variant | 0.17 |
clpC1 | 4039932 | p.Gly258Val | missense_variant | 0.28 |
embC | 4239842 | c.-21C>A | upstream_gene_variant | 0.18 |
embC | 4242476 | p.Pro872Ala | missense_variant | 0.25 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.37 |
embC | 4242827 | p.Leu989Val | missense_variant | 0.2 |
ubiA | 4269529 | p.Ala102Gly | missense_variant | 0.2 |
ethA | 4327672 | c.-199G>A | upstream_gene_variant | 0.24 |
whiB6 | 4338187 | p.Ser112Phe | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |