Run ID: ERR046766
Sample name:
Date: 31-03-2023 08:50:12
Number of reads: 8137586
Percentage reads mapped: 99.66
Strain: lineage4.8.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
lineage4.8.2 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5347 | c.108G>C | synonymous_variant | 0.15 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 8135 | c.834C>T | synonymous_variant | 1.0 |
mshA | 576751 | p.Lys468Asn | missense_variant | 0.21 |
rpoB | 759620 | c.-187A>C | upstream_gene_variant | 0.32 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776891 | p.Gln530His | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475363 | n.1706C>A | non_coding_transcript_exon_variant | 0.2 |
inhA | 1674892 | p.Asn231Asp | missense_variant | 0.2 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2167871 | c.2742G>C | synonymous_variant | 0.23 |
PPE35 | 2168149 | p.Pro822Ser | missense_variant | 1.0 |
PPE35 | 2169866 | c.747G>C | synonymous_variant | 0.36 |
PPE35 | 2170156 | p.Ala153Pro | missense_variant | 0.28 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714366 | p.Val323Leu | missense_variant | 0.19 |
eis | 2715586 | c.-254G>C | upstream_gene_variant | 0.24 |
Rv2752c | 3064552 | p.Arg547Pro | missense_variant | 0.18 |
Rv2752c | 3064741 | p.Gly484Ala | missense_variant | 0.21 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
fbiB | 3641955 | p.Gly141Arg | missense_variant | 0.19 |
alr | 3840268 | p.Thr385Pro | missense_variant | 0.25 |
clpC1 | 4038857 | c.1848C>A | synonymous_variant | 0.14 |
clpC1 | 4039729 | p.Asp326Asn | missense_variant | 1.0 |
clpC1 | 4039932 | p.Gly258Val | missense_variant | 0.31 |
embC | 4241456 | p.Ala532Pro | missense_variant | 0.31 |
embC | 4242476 | p.Pro872Ala | missense_variant | 0.19 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.34 |
embC | 4242827 | p.Leu989Val | missense_variant | 0.19 |
embA | 4244375 | c.1143C>G | synonymous_variant | 0.17 |
embA | 4246423 | p.Val1064Gly | missense_variant | 0.23 |
ubiA | 4269529 | p.Ala102Gly | missense_variant | 0.14 |
ethA | 4327672 | c.-199G>A | upstream_gene_variant | 0.23 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448476 | c.-27_*1408del | transcript_ablation | 1.0 |