Run ID: ERR046879
Sample name:
Date: 31-03-2023 08:55:07
Number of reads: 6616099
Percentage reads mapped: 99.68
Strain: lineage4.8.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
lineage4.8.2 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 8135 | c.834C>T | synonymous_variant | 1.0 |
gyrA | 8377 | p.Asp359Gly | missense_variant | 0.21 |
mshA | 576751 | p.Lys468Asn | missense_variant | 0.17 |
rpoC | 762836 | c.-534C>G | upstream_gene_variant | 0.28 |
rpoC | 764725 | p.Phe452Leu | missense_variant | 0.21 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776891 | p.Gln530His | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
atpE | 1461019 | c.-26C>A | upstream_gene_variant | 0.17 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475363 | n.1706C>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476408 | n.2751G>C | non_coding_transcript_exon_variant | 0.21 |
inhA | 1674892 | p.Asn231Asp | missense_variant | 0.18 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168149 | p.Pro822Ser | missense_variant | 1.0 |
PPE35 | 2169866 | c.747G>C | synonymous_variant | 0.31 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518891 | c.777C>A | synonymous_variant | 0.25 |
eis | 2714366 | p.Val323Leu | missense_variant | 0.33 |
eis | 2715586 | c.-254G>C | upstream_gene_variant | 0.25 |
Rv2752c | 3064552 | p.Arg547Pro | missense_variant | 0.18 |
Rv2752c | 3064741 | p.Gly484Ala | missense_variant | 0.31 |
thyX | 3067995 | c.-50A>C | upstream_gene_variant | 0.15 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 0.8 |
Rv3083 | 3448500 | c.-4A>G | upstream_gene_variant | 0.67 |
Rv3083 | 3448501 | c.-3G>T | upstream_gene_variant | 0.67 |
fbiB | 3641955 | p.Gly141Arg | missense_variant | 0.14 |
ddn | 3987013 | p.Gly57Ala | missense_variant | 0.22 |
clpC1 | 4038857 | c.1848C>A | synonymous_variant | 0.19 |
clpC1 | 4039729 | p.Asp326Asn | missense_variant | 1.0 |
clpC1 | 4039932 | p.Gly258Val | missense_variant | 0.29 |
embC | 4239973 | c.111T>G | synonymous_variant | 0.21 |
embC | 4241456 | p.Ala532Pro | missense_variant | 0.39 |
embC | 4242476 | p.Pro872Ala | missense_variant | 0.28 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.28 |
embB | 4248725 | p.Ser738Ala | missense_variant | 0.32 |
ubiA | 4269529 | p.Ala102Gly | missense_variant | 0.21 |
ethA | 4327672 | c.-199G>A | upstream_gene_variant | 0.25 |
ethR | 4327912 | p.Arg122Gly | missense_variant | 0.23 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448500 | c.-3_*1408del | transcript_ablation | 1.0 |