Run ID: ERR10219867
Sample name:
Date: 31-03-2023 09:12:34
Number of reads: 1132330
Percentage reads mapped: 95.5
Strain: lineage4.1.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1417140 | p.Ala70Ser | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 0.98 |
rrs | 1472675 | n.830T>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472755 | n.910G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473115 | n.1270G>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1475937 | n.2280A>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475963 | n.2306G>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475978 | n.2321C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.14 |
fabG1 | 1673249 | c.-191C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
folC | 2747022 | p.Val193Ile | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448894 | p.Tyr131Asp | missense_variant | 1.0 |
Rv3083 | 3449642 | p.Asn380Ser | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiA | 3641164 | p.Ile208Val | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |