Run ID: ERR10687088
Sample name:
Date: 31-03-2023 10:42:11
Number of reads: 1539642
Percentage reads mapped: 98.47
Strain: lineage4.3.3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.3 | Euro-American (LAM) | LAM;T | RD115 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8040 | p.Gly247Ser | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 575153 | c.-195C>G | upstream_gene_variant | 0.12 |
mshA | 575156 | c.-192G>C | upstream_gene_variant | 0.12 |
mshA | 575162 | c.-186T>C | upstream_gene_variant | 0.12 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 0.96 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776367 | p.Leu705Pro | missense_variant | 0.11 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304481 | c.1551T>G | synonymous_variant | 0.11 |
fbiC | 1304496 | c.1566T>G | synonymous_variant | 0.11 |
fbiC | 1304499 | c.1569T>G | synonymous_variant | 0.12 |
fbiC | 1304520 | c.1590A>G | synonymous_variant | 0.11 |
fbiC | 1304526 | c.1596T>G | synonymous_variant | 0.1 |
fbiC | 1304533 | c.1603T>C | synonymous_variant | 0.11 |
fbiC | 1304538 | c.1608C>G | synonymous_variant | 0.1 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170443 | p.Trp57Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518919 | p.Gly269Ser | missense_variant | 1.0 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448533 | c.30C>T | synonymous_variant | 0.11 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
embC | 4242182 | p.Ala774Ser | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |