Run ID: ERR10796569
Sample name:
Date: 31-03-2023 11:11:41
Number of reads: 2011
Percentage reads mapped: 99.36
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 8858 | c.1557T>C | synonymous_variant | 1.0 |
gyrA | 8870 | c.1569G>C | synonymous_variant | 1.0 |
gyrA | 8873 | c.1572A>G | synonymous_variant | 1.0 |
gyrA | 8897 | c.1596T>C | synonymous_variant | 1.0 |
gyrA | 8903 | c.1602T>C | synonymous_variant | 1.0 |
gyrA | 8915 | c.1614A>G | synonymous_variant | 1.0 |
gyrA | 8942 | c.1641G>C | synonymous_variant | 1.0 |
gyrA | 8945 | c.1644G>C | synonymous_variant | 1.0 |
gyrA | 8946 | c.1645T>C | synonymous_variant | 1.0 |
gyrA | 8957 | c.1656C>T | synonymous_variant | 1.0 |
gyrA | 8967 | p.Ala556Lys | missense_variant | 1.0 |
rpoB | 761132 | c.1326G>C | synonymous_variant | 1.0 |
rpoB | 761133 | c.1327T>C | synonymous_variant | 1.0 |
rpoB | 761147 | c.1341C>T | synonymous_variant | 1.0 |
rpoB | 761150 | c.1344A>T | synonymous_variant | 1.0 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 1.0 |
rpoB | 761171 | c.1365C>T | synonymous_variant | 1.0 |
rpoB | 761178 | p.Ser458Thr | missense_variant | 1.0 |
rpoB | 761186 | p.Glu460Asp | missense_variant | 1.0 |
rpoB | 761189 | c.1383T>C | synonymous_variant | 1.0 |
rpoB | 761195 | c.1389G>C | synonymous_variant | 1.0 |
rpoB | 761198 | c.1392G>C | synonymous_variant | 1.0 |
rpoB | 761219 | c.1413G>C | synonymous_variant | 1.0 |
rpoB | 762158 | c.2352G>C | synonymous_variant | 1.0 |
rpoB | 762167 | c.2361T>C | synonymous_variant | 1.0 |
rpoB | 762176 | c.2370T>C | synonymous_variant | 1.0 |
rpoB | 762185 | c.2379G>C | synonymous_variant | 1.0 |
rpoB | 762194 | c.2388G>C | synonymous_variant | 1.0 |
rpoB | 762233 | c.2427G>C | synonymous_variant | 1.0 |
rpoB | 762236 | c.2430G>C | synonymous_variant | 1.0 |
rpoB | 762245 | c.2439G>C | synonymous_variant | 1.0 |
rpoB | 762275 | c.2469C>T | synonymous_variant | 1.0 |
rpoB | 762284 | c.2478G>C | synonymous_variant | 1.0 |
rpoB | 762293 | c.2487T>C | synonymous_variant | 1.0 |
rpoB | 762296 | c.2490G>C | synonymous_variant | 1.0 |
rpoC | 762959 | c.-411G>C | upstream_gene_variant | 1.0 |
rpoC | 762962 | c.-408C>T | upstream_gene_variant | 1.0 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>G | upstream_gene_variant | 1.0 |
rpoC | 763034 | c.-336C>G | upstream_gene_variant | 1.0 |
rpoC | 763040 | c.-330C>G | upstream_gene_variant | 1.0 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 1.0 |
rpoC | 763082 | c.-288C>T | upstream_gene_variant | 1.0 |
rpoC | 763088 | c.-282C>G | upstream_gene_variant | 1.0 |
rpoC | 763094 | c.-276G>C | upstream_gene_variant | 1.0 |
rpoC | 763115 | c.-255T>C | upstream_gene_variant | 1.0 |
rpoC | 763127 | c.-243G>C | upstream_gene_variant | 1.0 |
rpoC | 763136 | c.-234C>T | upstream_gene_variant | 1.0 |
rpoC | 763145 | c.-225G>A | upstream_gene_variant | 1.0 |
rpoC | 763157 | c.-213G>T | upstream_gene_variant | 1.0 |
rpoC | 763166 | c.-204A>G | upstream_gene_variant | 1.0 |
rpoC | 763468 | c.99G>C | synonymous_variant | 1.0 |
rpoC | 763486 | c.117T>C | synonymous_variant | 1.0 |
rpoC | 763492 | c.123G>C | synonymous_variant | 1.0 |
rpoC | 763528 | c.159G>A | synonymous_variant | 1.0 |
rpoC | 763531 | c.162G>T | synonymous_variant | 1.0 |
rpoC | 763546 | c.177A>G | synonymous_variant | 1.0 |
rpoC | 763570 | c.201G>C | synonymous_variant | 1.0 |
rpoC | 763594 | c.225C>T | synonymous_variant | 1.0 |
rpoC | 763633 | c.264T>C | synonymous_variant | 1.0 |
rpoC | 763657 | c.288G>A | synonymous_variant | 1.0 |
rpoC | 763660 | c.291T>G | synonymous_variant | 1.0 |
rpoC | 763666 | c.297G>C | synonymous_variant | 1.0 |
rpoC | 763669 | c.300C>G | synonymous_variant | 1.0 |
rpoC | 763675 | c.306C>G | synonymous_variant | 1.0 |
rpoC | 764387 | c.1018T>C | synonymous_variant | 1.0 |
rpoC | 764405 | c.1036_1038delAGGinsCGC | synonymous_variant | 1.0 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 1.0 |
rpoC | 764626 | c.1257C>T | synonymous_variant | 1.0 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 1.0 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 1.0 |
rpoC | 764668 | c.1299C>T | synonymous_variant | 1.0 |
rpoC | 764692 | c.1323C>T | synonymous_variant | 1.0 |
rpoC | 766996 | c.3627C>T | synonymous_variant | 1.0 |
rpoC | 767002 | c.3633G>C | synonymous_variant | 1.0 |
rpoC | 767008 | c.3639G>A | synonymous_variant | 1.0 |
rpoC | 767023 | c.3654C>T | synonymous_variant | 1.0 |
rpoC | 767044 | c.3675G>C | synonymous_variant | 1.0 |
rpoC | 767080 | c.3711G>C | synonymous_variant | 1.0 |
rpoC | 767098 | c.3729T>C | synonymous_variant | 1.0 |
rpoC | 767104 | c.3735C>G | synonymous_variant | 1.0 |
rpoC | 767107 | c.3738C>T | synonymous_variant | 1.0 |
rpoC | 767119 | c.3750A>G | synonymous_variant | 1.0 |
rpoC | 767125 | c.3756G>C | synonymous_variant | 1.0 |
rpoC | 767134 | c.3765C>T | synonymous_variant | 1.0 |
rpoC | 767138 | c.3769C>T | synonymous_variant | 1.0 |
rpoC | 767149 | c.3780C>T | synonymous_variant | 1.0 |
rrs | 1472102 | n.257G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472446 | n.601T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472452 | n.607G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472597 | n.752G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472607 | n.762G>A | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472612 | n.767G>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472674 | n.829T>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472675 | n.830T>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472677 | n.832C>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472692 | n.847T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472754 | n.909G>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472973 | n.1128A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473102 | n.1257C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473115 | n.1270G>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.83 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1473270 | n.1425G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474496 | n.839C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474497 | n.840G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474506 | n.849C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474507 | n.850G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474717 | n.1060A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474722 | n.1065T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474743 | n.1086T>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475475 | n.1818C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475479 | n.1822C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475480 | n.1823A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475505 | n.1848G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475531 | n.1874C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.68 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 1.0 |
rpsA | 1833589 | c.48A>C | synonymous_variant | 1.0 |
rpsA | 1833595 | c.54T>G | synonymous_variant | 1.0 |
rpsA | 1833596 | p.Ser19Ala | missense_variant | 1.0 |
rpsA | 1833604 | c.63C>T | synonymous_variant | 1.0 |
rpsA | 1833616 | c.75A>T | synonymous_variant | 1.0 |
rpsA | 1833619 | c.78A>C | synonymous_variant | 1.0 |
rpsA | 1833625 | c.84A>G | synonymous_variant | 1.0 |
rpsA | 1833664 | c.123C>G | synonymous_variant | 1.0 |
rpsA | 1833676 | c.135A>G | synonymous_variant | 1.0 |
rpsA | 1833679 | c.138G>T | synonymous_variant | 1.0 |
rpsA | 1833685 | c.144G>C | synonymous_variant | 1.0 |
rpsA | 1833691 | c.150G>A | synonymous_variant | 1.0 |
rpsA | 1833694 | c.153G>T | synonymous_variant | 1.0 |
rpsA | 1833697 | c.156C>T | synonymous_variant | 1.0 |
rpsA | 1833700 | c.159C>T | synonymous_variant | 1.0 |
rpsA | 1833709 | c.168C>T | synonymous_variant | 1.0 |
rpsA | 1833811 | c.270G>T | synonymous_variant | 1.0 |
rpsA | 1833823 | c.282G>A | synonymous_variant | 1.0 |
rpsA | 1833832 | c.291G>A | synonymous_variant | 1.0 |
rpsA | 1833838 | c.297G>C | synonymous_variant | 1.0 |
rpsA | 1833841 | c.300C>G | synonymous_variant | 1.0 |
rpsA | 1833847 | c.306C>G | synonymous_variant | 1.0 |
rpsA | 1833856 | c.315A>G | synonymous_variant | 1.0 |
rpsA | 1833862 | c.321G>T | synonymous_variant | 1.0 |
rpsA | 1833874 | c.333T>G | synonymous_variant | 1.0 |
rpsA | 1833886 | c.345C>G | synonymous_variant | 1.0 |
rpsA | 1833894 | p.Ala118Glu | missense_variant | 1.0 |
rpsA | 1833928 | c.387G>C | synonymous_variant | 1.0 |
rpsA | 1833949 | c.408T>C | synonymous_variant | 1.0 |
rpsA | 1833961 | c.420C>G | synonymous_variant | 1.0 |
rpsA | 1833970 | c.429G>T | synonymous_variant | 1.0 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 1.0 |
rpsA | 1833991 | c.450C>G | synonymous_variant | 1.0 |
rpsA | 1834000 | c.459G>C | synonymous_variant | 1.0 |
rpsA | 1834009 | c.468C>T | synonymous_variant | 1.0 |
rpsA | 1834012 | c.471G>C | synonymous_variant | 1.0 |
rpsA | 1834015 | c.474G>C | synonymous_variant | 1.0 |
rpsA | 1834021 | c.480C>T | synonymous_variant | 1.0 |
rpsA | 1834030 | c.489C>G | synonymous_variant | 1.0 |
rpsA | 1834033 | c.492C>T | synonymous_variant | 1.0 |
rpsA | 1834375 | c.834G>C | synonymous_variant | 1.0 |
rpsA | 1834396 | c.855G>C | synonymous_variant | 1.0 |
rpsA | 1834429 | c.888C>T | synonymous_variant | 1.0 |
rpsA | 1834438 | c.897C>T | synonymous_variant | 1.0 |
rpsA | 1834451 | c.910T>C | synonymous_variant | 1.0 |
rpsA | 1834456 | c.915T>G | synonymous_variant | 1.0 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 1.0 |
rpsA | 1834477 | c.936C>T | synonymous_variant | 1.0 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 1.0 |
rpsA | 1834519 | c.978G>C | synonymous_variant | 1.0 |
rpsA | 1834520 | p.Ala327Ser | missense_variant | 1.0 |
rpsA | 1834528 | c.987T>C | synonymous_variant | 1.0 |
rpsA | 1834534 | c.993C>T | synonymous_variant | 1.0 |
rpsA | 1834543 | c.1002C>G | synonymous_variant | 1.0 |
rpsA | 1834546 | c.1005T>C | synonymous_variant | 1.0 |
rpsA | 1834552 | c.1011G>T | synonymous_variant | 1.0 |
rpsA | 1834555 | c.1014T>G | synonymous_variant | 1.0 |
rpsA | 1834557 | p.Ala339Gly | missense_variant | 1.0 |
rpsA | 1834606 | c.1065C>T | synonymous_variant | 1.0 |
rpsA | 1834609 | c.1068T>C | synonymous_variant | 1.0 |
rpoA | 3878184 | c.324C>T | synonymous_variant | 1.0 |
rpoA | 3878193 | c.315T>C | synonymous_variant | 1.0 |
rpoA | 3878196 | p.Glu104Ala | missense_variant | 1.0 |
rpoA | 3878205 | c.303T>C | synonymous_variant | 1.0 |
rpoA | 3878217 | c.291A>G | synonymous_variant | 1.0 |
rpoA | 3878259 | c.249G>C | synonymous_variant | 1.0 |
rpoA | 3878271 | c.237T>C | synonymous_variant | 0.75 |
rpoA | 3878283 | p.Glu75Asp | missense_variant | 1.0 |
rpoA | 3878292 | c.216T>C | synonymous_variant | 1.0 |
rpoA | 3878298 | c.210A>G | synonymous_variant | 1.0 |
rpoA | 3878301 | c.207C>G | synonymous_variant | 1.0 |
clpC1 | 4038989 | c.1716T>C | synonymous_variant | 1.0 |
clpC1 | 4038997 | c.1708T>C | synonymous_variant | 1.0 |
clpC1 | 4039022 | c.1683A>G | synonymous_variant | 1.0 |
clpC1 | 4039070 | c.1635G>C | synonymous_variant | 1.0 |
clpC1 | 4039121 | c.1584T>C | synonymous_variant | 1.0 |
clpC1 | 4039142 | c.1563A>G | synonymous_variant | 1.0 |
clpC1 | 4039145 | c.1560G>C | synonymous_variant | 1.0 |
clpC1 | 4039169 | p.Glu512Asp | missense_variant | 1.0 |
clpC1 | 4039172 | c.1533A>G | synonymous_variant | 1.0 |
clpC1 | 4039178 | c.1527G>C | synonymous_variant | 1.0 |
clpC1 | 4039183 | c.1522T>C | synonymous_variant | 1.0 |
clpC1 | 4039190 | c.1515C>T | synonymous_variant | 1.0 |
clpC1 | 4039262 | c.1443C>T | synonymous_variant | 1.0 |
clpC1 | 4039265 | c.1440C>T | synonymous_variant | 1.0 |
clpC1 | 4039271 | c.1434G>A | synonymous_variant | 1.0 |
clpC1 | 4039283 | c.1422C>T | synonymous_variant | 1.0 |
clpC1 | 4039286 | c.1417_1419delCTTinsTTA | synonymous_variant | 1.0 |
clpC1 | 4039289 | c.1416T>C | synonymous_variant | 1.0 |
clpC1 | 4039292 | c.1413C>T | synonymous_variant | 1.0 |
clpC1 | 4039304 | c.1401G>A | synonymous_variant | 1.0 |
clpC1 | 4040009 | c.696C>G | synonymous_variant | 1.0 |
clpC1 | 4040015 | c.690G>C | synonymous_variant | 1.0 |
clpC1 | 4040021 | c.684A>T | synonymous_variant | 1.0 |
clpC1 | 4040024 | c.681A>G | synonymous_variant | 1.0 |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 1.0 |
clpC1 | 4040048 | c.657C>T | synonymous_variant | 1.0 |
clpC1 | 4040087 | c.618G>C | synonymous_variant | 1.0 |
clpC1 | 4040090 | c.613_615delTCTinsAGC | synonymous_variant | 1.0 |
clpC1 | 4040093 | c.612C>G | synonymous_variant | 1.0 |