Run ID: ERR11043377
Sample name:
Date: 31-03-2023 11:33:13
Number of reads: 6212250
Percentage reads mapped: 99.55
Strain: lineage4.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.26 |
mshA | 576482 | p.Val379Leu | missense_variant | 0.2 |
rpoB | 761231 | c.1425C>T | synonymous_variant | 0.99 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiA | 3641447 | p.Thr302Met | missense_variant | 1.0 |
rpoA | 3877553 | p.Glu319Lys | missense_variant | 1.0 |
rpoA | 3878559 | c.-53_-52insC | upstream_gene_variant | 0.12 |
rpoA | 3878601 | c.-95delG | upstream_gene_variant | 0.65 |
rpoA | 3878613 | c.-113_-107delCAACCCA | upstream_gene_variant | 0.55 |
embC | 4240897 | c.1035C>G | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 0.99 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4246542 | p.Ser10Asn | missense_variant | 0.21 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.36 |
embB | 4248209 | p.Val566Met | missense_variant | 1.0 |
embB | 4248972 | p.Lys820Thr | missense_variant | 0.99 |
embB | 4249408 | c.2895G>A | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |