Run ID: ERR11049469
Sample name:
Date: 01-04-2023 04:56:09
Number of reads: 5639465
Percentage reads mapped: 99.66
Strain: lineage4.4.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.4 | Euro-American | S;T | None | 1.0 |
lineage4.4.1 | Euro-American (S-type) | S;T | None | 1.0 |
lineage4.4.1.1 | Euro-American | S;Orphans | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9647 | c.2346C>G | synonymous_variant | 0.18 |
mshA | 576456 | p.Val370Gly | missense_variant | 0.29 |
mshA | 576489 | p.Val381Gly | missense_variant | 0.22 |
mshA | 576613 | c.1266A>C | synonymous_variant | 0.38 |
mshA | 576616 | c.1269G>C | synonymous_variant | 0.29 |
rpoC | 764367 | p.Gly333Ala | missense_variant | 0.24 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777883 | p.Gly200Arg | missense_variant | 0.23 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.33 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102817 | p.Leu76Val | missense_variant | 0.15 |
ndh | 2102990 | p.Val18Ala | missense_variant | 1.0 |
PPE35 | 2169840 | p.Gly258Asp | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2519071 | p.Asp319Glu | missense_variant | 0.27 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.17 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.59 |
fbiD | 3339751 | p.Ala212Pro | missense_variant | 0.21 |
Rv3083 | 3448608 | c.105G>A | synonymous_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568428 | c.252A>G | synonymous_variant | 0.37 |
whiB7 | 3568431 | c.249C>G | synonymous_variant | 0.23 |
Rv3236c | 3612665 | p.Val151Ala | missense_variant | 1.0 |
rpoA | 3878597 | c.-90G>C | upstream_gene_variant | 0.38 |
rpoA | 3878600 | c.-93G>C | upstream_gene_variant | 0.21 |
rpoA | 3878637 | c.-130G>C | upstream_gene_variant | 0.4 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.54 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.36 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246527 | p.Ala5Gly | missense_variant | 0.38 |
embB | 4247020 | c.507C>G | synonymous_variant | 0.21 |
embB | 4247812 | c.1299G>A | synonymous_variant | 1.0 |
embB | 4248328 | c.1815G>C | synonymous_variant | 0.24 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |