TB-Profiler result

Run: ERR11049742

Summary

Run ID: ERR11049742

Sample name:

Date: 01-04-2023 18:53:36

Number of reads: 5427326

Percentage reads mapped: 99.72

Strain: lineage4

Drug-resistance: Sensitive


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
mshA 576108 p.Ala254Gly missense_variant 0.16
rpoB 761889 p.Val695Leu missense_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rplC 801009 c.201A>G synonymous_variant 0.99
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rpsA 1834852 c.1311C>A synonymous_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
PPE35 2170065 p.Ala183Gly missense_variant 0.22
Rv1979c 2223214 c.-50A>C upstream_gene_variant 0.99
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pepQ 2860159 p.Ala87Gly missense_variant 0.23
Rv2752c 3065517 c.675C>T synonymous_variant 0.99
fbiD 3339734 p.Ala206Gly missense_variant 0.5
fbiD 3339746 p.Ala210Gly missense_variant 0.18
Rv3083 3448991 p.Cys163Tyr missense_variant 1.0
fprA 3474299 p.Asp98Gly missense_variant 1.0
rpoA 3878595 c.-88C>T upstream_gene_variant 0.27
rpoA 3878635 c.-128C>T upstream_gene_variant 0.14
rpoA 3878641 c.-134C>G upstream_gene_variant 0.39
embC 4240409 p.Pro183Ala missense_variant 0.2
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embB 4246584 p.Arg24Pro missense_variant 0.19
embB 4248538 c.2025G>A synonymous_variant 1.0
ethA 4328317 c.-844C>T upstream_gene_variant 1.0
whiB6 4338285 c.237C>T synonymous_variant 0.99
whiB6 4338595 c.-75delG upstream_gene_variant 1.0