Run ID: ERR11050004
Sample name:
Date: 02-04-2023 07:03:41
Number of reads: 3239941
Percentage reads mapped: 99.47
Strain: lineage4.2.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.2 | Euro-American | H;T;LAM | None | 1.0 |
lineage4.2.2 | Euro-American (Ural) | T;LAM7-TUR | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576077 | c.730C>T | synonymous_variant | 1.0 |
mshA | 576113 | p.Arg256Gly | missense_variant | 0.35 |
mshA | 576119 | p.Ala258Pro | missense_variant | 0.17 |
mshA | 576616 | c.1269G>C | synonymous_variant | 0.24 |
rpoC | 764367 | p.Gly333Ala | missense_variant | 0.23 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777883 | p.Gly200Arg | missense_variant | 0.28 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304023 | p.Val365Ile | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1476058 | n.2401T>G | non_coding_transcript_exon_variant | 0.15 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.42 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.16 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2519071 | p.Asp319Glu | missense_variant | 0.32 |
Rv2752c | 3066280 | c.-89C>T | upstream_gene_variant | 1.0 |
ald | 3086742 | c.-78A>C | upstream_gene_variant | 0.99 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087816 | p.Cys333Gly | missense_variant | 0.17 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.5 |
fbiD | 3339751 | p.Ala212Pro | missense_variant | 0.25 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568428 | c.252A>G | synonymous_variant | 0.55 |
whiB7 | 3568431 | c.249C>G | synonymous_variant | 0.29 |
Rv3236c | 3612012 | p.Leu369Val | missense_variant | 1.0 |
Rv3236c | 3612827 | p.Ile97Ser | missense_variant | 1.0 |
rpoA | 3878597 | c.-90G>C | upstream_gene_variant | 0.4 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.82 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.31 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246527 | p.Ala5Gly | missense_variant | 0.3 |
embB | 4247016 | p.Ser168Trp | missense_variant | 0.24 |
embB | 4247020 | c.507C>G | synonymous_variant | 0.23 |
embB | 4248328 | c.1815G>C | synonymous_variant | 0.31 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |