Run ID: ERR11050100
Sample name:
Date: 02-04-2023 11:40:31
Number of reads: 2522683
Percentage reads mapped: 99.46
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9647 | c.2346C>G | synonymous_variant | 0.25 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
mshA | 576453 | p.Val369Gly | missense_variant | 0.3 |
mshA | 576483 | p.Val379Ala | missense_variant | 0.25 |
mshA | 576489 | p.Val381Gly | missense_variant | 0.21 |
mshA | 576606 | p.Ala420Gly | missense_variant | 0.35 |
mshA | 576613 | c.1266A>C | synonymous_variant | 0.36 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 764367 | p.Gly333Ala | missense_variant | 0.15 |
rpoC | 764534 | p.Arg389Gly | missense_variant | 0.2 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777883 | p.Gly200Arg | missense_variant | 0.3 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
atpE | 1461104 | c.60C>G | synonymous_variant | 0.19 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.27 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170069 | p.Pro182Ala | missense_variant | 0.17 |
PPE35 | 2170386 | p.Leu76Arg | missense_variant | 0.23 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
kasA | 2519071 | p.Asp319Glu | missense_variant | 0.15 |
pepQ | 2859933 | c.486C>G | synonymous_variant | 0.28 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.2 |
Rv2752c | 3064823 | p.Val457Leu | missense_variant | 0.26 |
Rv2752c | 3065602 | p.Asp197Gly | missense_variant | 0.25 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087816 | p.Cys333Gly | missense_variant | 0.16 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474050 | p.Ala15Gly | missense_variant | 0.16 |
Rv3236c | 3612963 | p.Ala52Ser | missense_variant | 1.0 |
rpoA | 3878565 | c.-58G>C | upstream_gene_variant | 0.23 |
rpoA | 3878580 | c.-73A>C | upstream_gene_variant | 0.33 |
rpoA | 3878587 | c.-80T>A | upstream_gene_variant | 0.4 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.78 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.44 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4246527 | p.Ala5Gly | missense_variant | 0.42 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.2 |
embB | 4247016 | p.Ser168Trp | missense_variant | 0.31 |
embB | 4247020 | c.507C>G | synonymous_variant | 0.3 |
embB | 4248328 | c.1815G>C | synonymous_variant | 0.2 |
whiB6 | 4338200 | p.Asp108His | missense_variant | 0.31 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |