Run ID: ERR11067790
Sample name:
Date: 05-04-2023 10:00:07
Number of reads: 3960644
Percentage reads mapped: 99.65
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6247 | c.1008G>A | synonymous_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.19 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168149 | p.Pro822Ser | missense_variant | 1.0 |
PPE35 | 2168428 | c.2184delG | frameshift_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.21 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.18 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.56 |
fbiD | 3339744 | c.627A>C | synonymous_variant | 0.22 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
rpoA | 3878613 | c.-106A>C | upstream_gene_variant | 0.21 |
rpoA | 3878618 | c.-111A>C | upstream_gene_variant | 0.17 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.29 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246529 | p.Ser6Gly | missense_variant | 0.15 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.33 |
ethR | 4327974 | p.Met142Ile | missense_variant | 1.0 |
ethR | 4327975 | p.Gln143Lys | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |