Run ID: ERR11068496
Sample name:
Date: 06-04-2023 14:57:12
Number of reads: 3982517
Percentage reads mapped: 99.46
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.19 |
mshA | 576119 | p.Ala258Pro | missense_variant | 0.28 |
mshA | 576463 | c.1116G>A | synonymous_variant | 1.0 |
ccsA | 620064 | c.174C>T | synonymous_variant | 0.2 |
rpoB | 760106 | c.300G>A | synonymous_variant | 1.0 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777314 | p.Trp389* | stop_gained | 0.11 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1407294 | p.Thr16Met | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170144 | p.Gly157Trp | missense_variant | 0.12 |
Rv1979c | 2222578 | p.Ala196Val | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
thyX | 3067951 | c.-6A>T | upstream_gene_variant | 0.12 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087311 | c.492C>T | synonymous_variant | 0.11 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3613258 | c.-149_-143dupCGCGTCG | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4243904 | c.672G>C | synonymous_variant | 0.11 |
embA | 4244483 | c.1251T>A | synonymous_variant | 0.27 |
embB | 4248329 | p.Met606Leu | missense_variant | 0.19 |
ethR | 4328030 | p.Ala161Gly | missense_variant | 0.31 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |