Run ID: ERR13431999
Sample name:
Date: 2025-02-11T16:09:29.208664
Number of reads: 630798
Percentage reads mapped: 99.53
Median coverage: 12.0
Strain: lineage4.1.1.2
Spoligotype:
Drug-resistance: Sensitive
Lineage | Family | RDs | Frequency |
---|---|---|---|
lineage4.1.1.2 | Euro-American (X-type) | None | 0.5 |
lineage4.1 | Euro-American | None | 0.36 |
lineage4 | Euro-American | None | 1.0 |
lineage4.1.1 | Euro-American (X-type) | None | 0.52 |
Drug | Resistance | Supporting mutations | WHO confidence | Comment |
---|---|---|---|---|
rifampicin | ||||
isoniazid | ||||
ethambutol | ||||
pyrazinamide | ||||
streptomycin | ||||
fluoroquinolones | ||||
moxifloxacin | ||||
ofloxacin | ||||
levofloxacin | ||||
ciprofloxacin | ||||
aminoglycosides | ||||
amikacin | ||||
capreomycin | ||||
kanamycin | ||||
cycloserine | ||||
ethionamide | ||||
clofazimine | ||||
para-aminosalicylic_acid | ||||
delamanid | ||||
bedaquiline | ||||
linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence | Comment |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence |
---|---|---|---|---|---|---|
inhA | 1673380 | c.-822C>G | upstream_gene_variant | 0.56 | isoniazid | |
ethionamide | ||||||
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.9 | pyrazinamide | |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.9 | pyrazinamide | |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 | bedaquiline | Not assoc w R - Interim |
clofazimine | Not assoc w R | |||||
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 | ethambutol | Not assoc w R |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.5 | ethambutol | Uncertain significance |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.54 | ethambutol | Uncertain significance |
embB | 4246555 | c.42G>C | synonymous_variant | 0.58 | ethambutol | |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.58 | ethambutol | Uncertain significance |