Run ID: ERR1633857
Sample name:
Date: 18-08-2022 14:47:05
Number of reads: 1533507
Percentage reads mapped: 99.59
Strain: lineage4.3.2.1;lineage2.2.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 0.1 |
lineage4 | Euro-American | LAM;T;S;X;H | None | 0.9 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 0.82 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 0.18 |
lineage4.3.2 | Euro-American (LAM) | LAM3 | None | 0.83 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 0.07 |
lineage4.3.2.1 | Euro-American (LAM) | LAM3 | RD761 | 0.86 |
lineage2.2.1.1 | East-Asian (Beijing) | Beijing-RD150 | RD105;RD207;RD181;RD150 | 0.19 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5520 | p.Pro94Leu | missense_variant | 0.87 |
gyrA | 7222 | c.-80C>T | upstream_gene_variant | 0.84 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.23 |
rpoC | 764666 | p.Gly433Ser | missense_variant | 0.13 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472337 | n.492C>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472341 | n.496G>A | non_coding_transcript_exon_variant | 0.14 |
inhA | 1674952 | p.Pro251Ala | missense_variant | 0.17 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 0.17 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
folC | 2747626 | c.-28G>A | upstream_gene_variant | 0.18 |
ribD | 2987307 | p.Ala157Pro | missense_variant | 0.29 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 0.75 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ddn | 3986929 | p.Tyr29Phe | missense_variant | 0.18 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 0.12 |
embB | 4249232 | p.Pro907Ser | missense_variant | 0.12 |
gid | 4407927 | p.Glu92Asp | missense_variant | 0.16 |
gid | 4408156 | p.Leu16Arg | missense_variant | 0.95 |