Run ID: ERR1633911
Sample name:
Date: 18-08-2022 14:48:10
Number of reads: 3704583
Percentage reads mapped: 99.76
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 575761 | c.414C>T | synonymous_variant | 1.0 |
mmpR5 | 778869 | c.-121G>T | upstream_gene_variant | 0.11 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781502 | c.-58G>T | upstream_gene_variant | 1.0 |
embR | 1416625 | c.723C>A | synonymous_variant | 0.17 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
pncA | 2289662 | c.-421G>T | upstream_gene_variant | 0.15 |
ald | 3086750 | c.-70A>C | upstream_gene_variant | 1.0 |