Rv2780 - c.-70A>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
106 Sensitive
0 RR-TB
15 HR-TB
19 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
44 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2 | 13 |
| lineage4.1.1.1 | 26 |
| lineage3.1.1 | 4 |
| lineage4.8 | 25 |
| lineage1.1.1 | 50 |
| lineage4.6.1 | 15 |
| lineage4.3.3 | 6 |
| lineage2.2.2 | 1 |
| lineage1.1.2 | 4 |
| lineage4.1.1.3 | 3 |
| lineage2.2.1 | 4 |
| lineage1.1.3.1 | 9 |
| lineage4.9 | 4 |
| lineage4.1.2.1 | 4 |
| lineage1.1.3.1;lineage4 | 1 |
| lineage1.2.2.1;lineage4.9.1 | 1 |
| lineage3.1.2 | 1 |
| lineage2.2.1.1;lineage4.6.1 | 4 |
| lineage1.1.1;lineage2.2.1.2 | 2 |
| lineage1.2.2.2 | 3 |
| La1.7 | 1 |
| lineage4.3.2 | 2 |
| lineage1.1.3.1;lineage2.2.1 | 1 |
| lineage1.2.2.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 185 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR7764415 | Sensitive | lineage4.1.2 | None | SRR29094464 | Sensitive | lineage4.1.2 | None | ERR13290062 | Sensitive | lineage4.1.1.1 | None | ERR163966 | Sensitive | lineage3.1.1 | mw | ERR212020 | Sensitive | lineage4.8 | mw | ERR163951 | Sensitive | lineage3.1.1 | mw | ERR212030 | Sensitive | lineage4.8 | mw | ERR212047 | Sensitive | lineage4.8 | mw | ERR221535 | Sensitive | lineage4.8 | mw | SRR17729418 | Other | lineage1.1.1 | None | SRR17729341 | Other | lineage1.1.1 | None | SRR29094435 | Sensitive | lineage4.8 | None | ERR4819984 | Sensitive | lineage4.6.1 | gb | SRR11662211 | MDR-TB | lineage1.1.1 | None | SRR26112648 | HR-TB | lineage4.3.3 | None | ERR9119423 | Other | lineage1.1.1 | None | SRR28859662 | Sensitive | lineage2.2.2 | None | ERR718495 | Other | lineage1.1.1 | th | ERR046976 | Sensitive | lineage4.1.1.1 | None | ERR2510593 | HR-TB | lineage1.1.2 | None | ERR400439 | Sensitive | lineage4.1.1.1 | gb | ERR400473 | Sensitive | lineage4.6.1 | gb | ERR400507 | Sensitive | lineage4.1.1.1 | gb | ERR400557 | Sensitive | lineage4.1.1.1 | gb | ERR400558 | Sensitive | lineage4.1.1.1 | gb | ERR2514492 | Sensitive | lineage4.1.1.1 | gb | ERR2512665 | Sensitive | lineage4.1.1.1 | gb | ERR11465256 | Sensitive | lineage4.1.1.3 | None | ERR176768 | Sensitive | lineage4.8 | mw | ERR176776 | Sensitive | lineage4.8 | mw | ERR181679 | Sensitive | lineage4.8 | mw | ERR181964 | Sensitive | lineage4.8 | mw | ERR046988 | Sensitive | lineage4.1.1.1 | gb | ERR046975 | Sensitive | lineage4.1.1.1 | gb | SRR5067517 | Other | lineage1.1.1 | vn | SRR5067357 | Other | lineage1.1.1 | vn | SRR5073705 | Other | lineage1.1.1 | vn | SRR5073518 | Other | lineage1.1.1 | vn | ERR11465885 | Sensitive | lineage4.1.1.3 | None | SRR21276978 | Sensitive | lineage2.2.1 | None | ERR11489052 | MDR-TB | lineage4.1.2 | None | SRR12199435 | Sensitive | lineage1.1.3.1 | None | ERR279610 | Sensitive | lineage4.9 | None | ERR4828585 | Other | lineage1.1.1 | vn | ERR4830402 | Other | lineage1.1.1 | vn | SRR17729402 | Other | lineage1.1.1 | None | SRR12931678 | HR-TB | lineage4.3.3 | None | ERR13290889 | HR-TB | lineage1.1.1 | None | SRR28868794 | Sensitive | lineage4.6.1 | None | ERR2843438 | Other | lineage1.1.1 | None | ERR2843439 | Other | lineage1.1.1 | None | SRR26399596 | HR-TB | lineage1.1.1 | None | SRR30182624 | Other | lineage1.1.1 | None | ERR9119358 | Other | lineage1.1.1 | None | SRR26399351 | Other | lineage1.1.1 | None | ERR4025096 | Sensitive | lineage4.1.2 | None | SRR12199461 | Sensitive | lineage1.1.3.1 | None | SRR29440973 | Other | lineage1.1.1 | None | ERR13289811 | Sensitive | lineage4.1.1.1 | None | ERR12328199 | Sensitive | lineage1.1.3.1 | None | SRR14801478 | Sensitive | lineage4.1.2.1 | None | SRR12199414 | Sensitive | lineage1.1.3.1;lineage4 | None | SRR26399839 | Other | lineage1.1.1 | None | SRR17729358 | Other | lineage1.1.1 | None | SRR29050611 | Other | lineage1.1.1 | None | SRR26112060 | HR-TB | lineage4.3.3 | None | SRR21657198 | HR-TB | lineage4.3.3 | None | SRR29052922 | HR-TB | lineage4.3.3 | None | ERR13582774 | Sensitive | lineage1.2.2.1;lineage4.9.1 | None | ERR10796554 | Sensitive | lineage4.1.2 | None | SRR26399725 | Other | lineage1.1.1 | None | ERR181903 | Sensitive | lineage4.8 | mw | ERR212046 | Sensitive | lineage4.8 | mw | ERR7737716 | MDR-TB | lineage1.1.1 | None | ERR11488556 | Pre-XDR-TB | lineage2.2.1 | None | SRR29231119 | Sensitive | lineage3.1.2 | None | SRR1173873 | MDR-TB | lineage2.2.1.1;lineage4.6.1 | None | ERR9899678 | Sensitive | lineage4.8 | None | ERR1199078 | Sensitive | lineage4.6.1 | None | ERR751703 | Sensitive | lineage1.1.3.1 | th | ERR752005 | Sensitive | lineage1.1.3.1 | th | ERR751842 | Sensitive | lineage1.1.3.1 | th | SRR26400030 | Other | lineage1.1.1 | None | ERR4828389 | Other | lineage1.1.1;lineage2.2.1.2 | vn | ERR4828390 | Other | lineage1.1.1 | vn | ERR046946 | Sensitive | lineage4.1.1.1 | gb | SRR21733074 | Other | lineage1.1.1 | None | SRR28045594 | Sensitive | lineage1.2.2.2 | None | SRR26399956 | Other | lineage1.1.1 | None | ERR495141 | Sensitive | lineage4.9 | None | SRR16370336 | MDR-TB | lineage1.1.1 | None | SRR7645994 | HR-TB | lineage4.1.2.1 | None | SRR11972391 | MDR-TB | lineage1.1.3.1 | None | ERR11774879 | Sensitive | lineage4.6.1 | None | ERR9125894 | Other | lineage1.1.1 | None | ERR990536 | Sensitive | lineage4.6.1 | None | ERR990535 | Sensitive | lineage4.6.1 | None | ERR11465055 | Sensitive | lineage4.1.1.3 | None | ERR4830353 | Other | La1.7 | None | ERR2245305 | HR-TB | lineage3.1.1 | no | ERR1633911 | Sensitive | lineage4.9 | None | ERR1633841 | Sensitive | lineage4.1.2 | za | SRR29081666 | MDR-TB | lineage4.8 | None | ERR12745261 | Sensitive | lineage4.1.2 | None | SRR28868628 | Other | lineage1.1.1 | None | SRR1173415 | MDR-TB | lineage2.2.1.1;lineage4.6.1 | None | SRR29051407 | Other | lineage1.1.1 | None | SRR26936941 | MDR-TB | lineage1.1.1 | None | ERR4817332 | Sensitive | lineage4.1.1.1 | None | ERR2510316 | MDR-TB | lineage1.1.2 | pk | SRR29051165 | Other | lineage1.1.1;lineage2.2.1.2 | None | SRR14807499 | Sensitive | lineage4.1.2.1 | None | SRR29081600 | MDR-TB | lineage4.8 | None | SRR1173866 | MDR-TB | lineage2.2.1.1;lineage4.6.1 | None | SRR21676405 | HR-TB | lineage4.3.3 | None | ERR12544093 | Sensitive | lineage4.1.2 | None | SRR17729346 | Other | lineage1.1.1 | None | SRR7069286 | Sensitive | lineage4.6.1 | None | SRR25515026 | Sensitive | lineage2.2.1 | None | ERR12544055 | Sensitive | lineage4.1.2 | None | ERR4828524 | Other | lineage1.1.1 | vn | ERR7911156 | MDR-TB | lineage1.1.1 | vn | ERR046739 | Sensitive | lineage4.1.1.1 | gb | ERR9030484 | MDR-TB | lineage1.1.2 | None | ERR072034 | Sensitive | lineage4.1.1.1 | gb | ERR072036 | Sensitive | lineage4.1.1.1 | gb | SRR2100096 | Sensitive | lineage4.1.1.1 | None | ERR163969 | Sensitive | lineage4.8 | mw | ERR212143 | Sensitive | lineage4.8 | mw | ERR245806 | Sensitive | lineage4.8 | mw | ERR2509890 | Sensitive | lineage4.1.1.1 | gb | ERR4819578 | Sensitive | lineage4.1.1.1 | gb | ERR2512519 | Sensitive | lineage4.6.1 | gb | SRR5709941 | Other | lineage1.1.1 | th | SRR6046458 | Sensitive | lineage4.1.1.1 | gb | SRR6045238 | Sensitive | lineage4.1.1.1 | gb | ERR036248 | Sensitive | lineage4.8 | mw | ERR245802 | Sensitive | lineage4.8 | mw | ERR037484 | Sensitive | lineage4.8 | mw | SRR16058258 | Other | lineage1.1.1 | None | ERR161107 | Sensitive | lineage3.1.1 | mw | SRR8217889 | HR-TB | lineage1.1.1 | None | ERR176537 | Sensitive | lineage4.8 | mw | ERR176590 | Sensitive | lineage4.8 | mw | SRR5065386 | Other | lineage1.1.1 | vn | ERR046962 | Sensitive | lineage4.1.1.1 | gb | ERR046980 | Sensitive | lineage4.1.1.1 | gb | SRR8217936 | Other | lineage1.1.1 | None | ERR12544211 | Sensitive | lineage4.1.2 | None | ERR6865804 | Sensitive | lineage4.1.2 | None | ERR176792 | Sensitive | lineage4.8 | mw | SRR21689909 | Sensitive | lineage4.9 | None | ERR046991 | Sensitive | lineage4.1.1.1 | gb | ERR211995 | Sensitive | lineage4.8 | mw | ERR072020 | Sensitive | lineage4.1.1.1 | gb | SRR5065322 | Other | lineage1.1.1 | vn | SRR5073987 | Other | lineage1.1.1 | vn | SRR5074190 | HR-TB | lineage4.3.2 | vn | SRR6797759 | Sensitive | lineage1.2.2.2 | None | SRR5074079 | Other | lineage1.1.1 | vn | SRR11972452 | MDR-TB | lineage1.1.3.1 | None | ERR4830200 | Other | lineage1.1.1 | vn | ERR11774874 | Sensitive | lineage4.6.1 | None | SRR12634563 | Sensitive | lineage4.6.1 | None | ERR2843440 | Other | lineage1.1.1 | None | ERR7361936 | Sensitive | lineage4.6.1 | None | SRR28868807 | Sensitive | lineage1.1.3.1;lineage2.2.1 | None | SRR26937057 | MDR-TB | lineage4.3.2 | None | SRR7535070 | Sensitive | lineage4.6.1 | None | SRR7535071 | Sensitive | lineage4.6.1 | None | SRR7535051 | Sensitive | lineage4.6.1 | None | SRR29051599 | HR-TB | lineage1.1.1 | None | SRR1723875 | Sensitive | lineage2.2.1 | cn | SRR29081642 | MDR-TB | lineage4.8 | None | ERR3256252 | MDR-TB | lineage4.1.2.1 | ph | SRR1173245 | MDR-TB | lineage2.2.1.1;lineage4.6.1 | None | ERR279536 | Sensitive | lineage4.1.2 | None | SRR7069812 | Sensitive | lineage4.1.1.1 | None | SRR29051405 | Other | lineage1.1.1 | None | SRR28045495 | Sensitive | lineage1.1.2 | None | ERR495067 | Sensitive | lineage4.1.2 | None | ERR13262047 | HR-TB | lineage1.2.2.2 | None | SRR26399726 | Other | lineage1.1.1 | None | SRR30182892 | Sensitive | lineage1.1.3.1 | None | ERR13582773 | Sensitive | lineage1.2.2.1;lineage4.9 | None |
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