Run ID: SRR12634563
Sample name:
Date: 03-04-2023 06:54:47
Number of reads: 2499044
Percentage reads mapped: 98.3
Strain: lineage4.6.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.6 | Euro-American | T;LAM | None | 0.99 |
lineage4.6.1 | Euro-American (Uganda) | T2 | RD724 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7539 | p.Thr80Ala | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.22 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776007 | p.His825Arg | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918198 | p.Leu87Val | missense_variant | 1.0 |
PPE35 | 2167825 | c.2754_2787delTTGGTTCAACACAAGTCCTGTTGGGCTGCTAGCC | frameshift_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv2752c | 3064985 | p.Leu403Met | missense_variant | 1.0 |
ald | 3086750 | c.-70A>C | upstream_gene_variant | 0.98 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiA | 3640373 | c.-170C>A | upstream_gene_variant | 0.63 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243557 | p.Ala109Thr | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
PPE35 | 2167825 | c.2753_2787delNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG | frameshift_variant | 1.0 |