Run ID: ERR046976
Sample name:
Date: 31-03-2023 08:59:35
Number of reads: 5051800
Percentage reads mapped: 99.45
Strain: lineage4.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8626 | p.Arg442His | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576751 | p.Lys468Asn | missense_variant | 0.22 |
ccsA | 620748 | c.858T>G | synonymous_variant | 0.22 |
rpoC | 762836 | c.-534C>G | upstream_gene_variant | 0.22 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777399 | p.Thr361Arg | missense_variant | 0.18 |
mmpR5 | 779371 | p.Ala128Pro | missense_variant | 0.31 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473102 | n.1257C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473369 | n.1524A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475363 | n.1706C>A | non_coding_transcript_exon_variant | 0.2 |
inhA | 1674892 | p.Asn231Asp | missense_variant | 0.33 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169866 | c.747G>C | synonymous_variant | 0.42 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714366 | p.Val323Leu | missense_variant | 0.24 |
pepQ | 2859381 | c.1038C>G | synonymous_variant | 0.24 |
Rv2752c | 3064552 | p.Arg547Pro | missense_variant | 0.23 |
Rv2752c | 3064741 | p.Gly484Ala | missense_variant | 0.28 |
thyX | 3067995 | c.-50A>C | upstream_gene_variant | 0.22 |
ald | 3086750 | c.-70A>C | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339550 | p.Gly145Trp | missense_variant | 0.23 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 0.99 |
fbiA | 3641447 | p.Thr302Met | missense_variant | 0.99 |
fbiB | 3641955 | p.Gly141Arg | missense_variant | 0.27 |
rpoA | 3877553 | p.Glu319Lys | missense_variant | 1.0 |
rpoA | 3878238 | p.Asp90Glu | missense_variant | 0.16 |
clpC1 | 4038857 | c.1848C>A | synonymous_variant | 0.13 |
clpC1 | 4039932 | p.Gly258Val | missense_variant | 0.21 |
embC | 4240897 | c.1035C>G | synonymous_variant | 1.0 |
embC | 4241456 | p.Ala532Pro | missense_variant | 0.38 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.39 |
embC | 4242827 | p.Leu989Val | missense_variant | 0.22 |
embA | 4244118 | p.Tyr296His | missense_variant | 1.0 |
embB | 4249408 | c.2895G>A | synonymous_variant | 1.0 |
ubiA | 4269880 | c.-48dupG | upstream_gene_variant | 1.0 |
ethA | 4327672 | c.-199G>A | upstream_gene_variant | 0.26 |
ethA | 4328330 | c.-858_-857insGC | upstream_gene_variant | 0.9 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |