Run ID: ERR1750910
Sample name:
Date: 31-03-2023 14:59:46
Number of reads: 6632876
Percentage reads mapped: 98.15
Strain: lineage4.1.1.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None | 1.0 |
lineage4.1.1.2 | Euro-American (X-type) | X1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 0.99 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474072 | n.415A>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474583 | n.926C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474601 | n.944C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474639 | n.982G>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475210 | n.1553T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475883 | n.2226A>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476181 | n.2524A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2155296 | c.816C>T | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 0.99 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3449787 | c.1284C>T | synonymous_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
clpC1 | 4039676 | c.1029G>A | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4243833 | p.Ala201Thr | missense_variant | 1.0 |
embB | 4246930 | p.Gln139His | missense_variant | 0.99 |
embB | 4249408 | c.2895G>A | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |