Run ID: ERR176814
Sample name:
Date: 31-03-2023 15:14:19
Number of reads: 4295760
Percentage reads mapped: 97.85
Strain: lineage4.3.4.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 0.99 |
lineage4.3.4 | Euro-American (LAM) | LAM | RD174 | 0.99 |
lineage4.3.4.2 | Euro-American (LAM) | LAM1;LAM4;LAM11 | RD174 | 0.99 |
lineage4.3.4.2.1 | Euro-American (LAM) | LAM11 | RD174 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6140 | p.Val301Leu | missense_variant | 0.99 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490751 | c.-32T>G | upstream_gene_variant | 0.38 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 0.99 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303016 | p.Val29Gly | missense_variant | 0.36 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472708 | n.863T>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472786 | n.941C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472803 | n.958T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472953 | n.1108G>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472975 | n.1130T>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472982 | n.1137G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476297 | n.2640C>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476353 | n.2696G>A | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476359 | n.2702C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.12 |
inhA | 1674952 | p.Pro251Ala | missense_variant | 0.23 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 0.95 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612009 | p.Ala370Thr | missense_variant | 0.96 |
alr | 3840719 | c.702A>G | synonymous_variant | 0.99 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 0.99 |
clpC1 | 4038857 | c.1848C>A | synonymous_variant | 0.26 |
embC | 4242425 | p.Arg855Gly | missense_variant | 0.25 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338371 | p.Thr51Pro | missense_variant | 0.97 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |