Run ID: ERR1950002
Sample name:
Date: 31-03-2023 15:37:09
Number of reads: 942054
Percentage reads mapped: 99.66
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576069 | p.Gly241Asp | missense_variant | 0.11 |
mshA | 576535 | c.1188T>C | synonymous_variant | 0.2 |
rpoC | 763969 | c.600C>A | synonymous_variant | 0.11 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpS5 | 778488 | p.Lys140Glu | missense_variant | 0.12 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
embR | 1416945 | p.Ser135Gly | missense_variant | 0.17 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
inhA | 1673625 | c.-577C>T | upstream_gene_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154749 | p.Ile455Val | missense_variant | 0.13 |
katG | 2154758 | p.Glu452Lys | missense_variant | 0.13 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169017 | p.Leu532Phe | missense_variant | 0.25 |
Rv1979c | 2222113 | p.Val351Gly | missense_variant | 0.12 |
Rv1979c | 2222185 | c.979delT | frameshift_variant | 0.11 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
folC | 2746731 | p.Tyr290Asn | missense_variant | 0.29 |
folC | 2747472 | p.Ile43Phe | missense_variant | 0.11 |
thyX | 3067247 | c.699C>T | synonymous_variant | 0.13 |
fbiA | 3641164 | p.Ile208Phe | missense_variant | 0.15 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408099 | p.Leu35Pro | missense_variant | 0.1 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |