Run ID: ERR2179691
Sample name:
Date: 10-08-2022 17:56:19
Number of reads: 2785313
Percentage reads mapped: 98.98
Strain: lineage4.5
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.5 | Euro-American | H;T | RD122 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7892 | c.591G>A | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 620029 | c.139C>T | synonymous_variant | 0.98 |
rpoC | 765212 | p.Pro615Thr | missense_variant | 0.15 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303106 | p.Cys59Phe | missense_variant | 0.13 |
Rv1258c | 1407380 | c.-40C>T | upstream_gene_variant | 0.93 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473899 | n.242A>C | non_coding_transcript_exon_variant | 0.09 |
inhA | 1673586 | c.-616C>A | upstream_gene_variant | 0.94 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170057 | p.Val186Met | missense_variant | 0.12 |
PPE35 | 2170568 | p.Ile15Met | missense_variant | 0.97 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
fbiD | 3339480 | p.Gln121His | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiA | 3641236 | p.Ala232Ser | missense_variant | 0.13 |
rpoA | 3878575 | c.-68C>T | upstream_gene_variant | 1.0 |
clpC1 | 4038318 | p.Pro796Leu | missense_variant | 0.96 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243482 | p.Ala84Ser | missense_variant | 0.91 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408054 | p.Leu50Arg | missense_variant | 0.94 |