Run ID: ERR2229063
Sample name:
Date: 31-03-2023 16:35:10
Number of reads: 1472779
Percentage reads mapped: 99.4
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.38 |
mshA | 576331 | c.984G>A | synonymous_variant | 0.12 |
ccsA | 620034 | c.144C>T | synonymous_variant | 0.15 |
rpoC | 765329 | p.Ser654Gly | missense_variant | 0.17 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
fbiC | 1304226 | c.1296C>A | synonymous_variant | 0.14 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.15 |
tlyA | 1917835 | c.-105A>G | upstream_gene_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2103211 | c.-169A>G | upstream_gene_variant | 0.12 |
PPE35 | 2167745 | p.Thr956Arg | missense_variant | 0.18 |
PPE35 | 2167965 | p.Ala883Gly | missense_variant | 0.17 |
PPE35 | 2167967 | c.2646A>C | synonymous_variant | 0.17 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169278 | c.1335T>C | synonymous_variant | 0.14 |
PPE35 | 2169281 | c.1332T>G | synonymous_variant | 0.19 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.56 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.59 |
PPE35 | 2170147 | p.Ser156Ala | missense_variant | 0.15 |
PPE35 | 2170157 | p.Ala152Ser | missense_variant | 0.18 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2519140 | c.1026G>C | synonymous_variant | 0.2 |
kasA | 2519143 | c.1029G>C | synonymous_variant | 0.2 |
fprA | 3474905 | p.Gly300Glu | missense_variant | 0.12 |
whiB7 | 3568428 | c.252A>G | synonymous_variant | 0.22 |
Rv3236c | 3612243 | p.Pro292Ala | missense_variant | 0.17 |
alr | 3841546 | c.-126C>A | upstream_gene_variant | 0.21 |
rpoA | 3878682 | c.-175A>G | upstream_gene_variant | 0.12 |
embC | 4240413 | p.Leu184Gln | missense_variant | 0.33 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244291 | c.1059G>A | synonymous_variant | 0.13 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.27 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.5 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.53 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.53 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.36 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.33 |
embB | 4247125 | c.612G>A | synonymous_variant | 0.12 |
aftB | 4269021 | c.-185C>T | upstream_gene_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |