Run ID: ERR2229202
Sample name:
Date: 31-03-2023 16:48:38
Number of reads: 1308986
Percentage reads mapped: 99.21
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.22 |
mshA | 576500 | p.Ile385Phe | missense_variant | 0.17 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776099 | c.2382C>G | synonymous_variant | 0.11 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 0.96 |
PPE35 | 2167868 | c.2745A>C | synonymous_variant | 0.11 |
PPE35 | 2167965 | p.Ala883Gly | missense_variant | 0.19 |
PPE35 | 2167967 | c.2646A>C | synonymous_variant | 0.18 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169902 | p.Leu237Phe | missense_variant | 0.2 |
PPE35 | 2169910 | p.Asn235Tyr | missense_variant | 0.18 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.25 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.25 |
PPE35 | 2170147 | p.Ser156Ala | missense_variant | 0.16 |
PPE35 | 2170157 | p.Ala152Ser | missense_variant | 0.16 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv3236c | 3612371 | p.Leu249Pro | missense_variant | 0.15 |
alr | 3841546 | c.-126C>A | upstream_gene_variant | 0.18 |
panD | 4044442 | c.-161C>A | upstream_gene_variant | 0.15 |
embC | 4242236 | p.Ala792Thr | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244788 | p.Phe519Ser | missense_variant | 0.11 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.12 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.27 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.38 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.38 |
embB | 4246988 | p.Ala159Ser | missense_variant | 0.13 |
embB | 4247028 | p.Leu172Arg | missense_variant | 0.3 |
embB | 4249737 | p.Pro1075His | missense_variant | 0.17 |
aftB | 4267954 | p.Ala295Pro | missense_variant | 0.12 |
aftB | 4268680 | p.Glu53Gln | missense_variant | 0.1 |
ethR | 4327900 | p.Lys118* | stop_gained | 0.12 |
ethR | 4328050 | c.505delC | frameshift_variant | 0.13 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |