Run ID: ERR2229298
Sample name:
Date: 31-03-2023 16:58:52
Number of reads: 1305975
Percentage reads mapped: 99.16
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
fgd1 | 491377 | p.Gly199Cys | missense_variant | 0.13 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.17 |
mshA | 576781 | c.1434G>T | synonymous_variant | 0.18 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775922 | c.2559G>C | synonymous_variant | 0.11 |
mmpL5 | 777128 | c.1353A>G | synonymous_variant | 0.12 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.17 |
tlyA | 1917760 | c.-180C>A | upstream_gene_variant | 0.2 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918166 | p.Ala76Glu | missense_variant | 0.12 |
katG | 2154874 | p.Tyr413Phe | missense_variant | 0.12 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169044 | c.1569G>C | synonymous_variant | 0.2 |
PPE35 | 2169053 | c.1560T>C | synonymous_variant | 0.17 |
PPE35 | 2169732 | p.Asn294Ser | missense_variant | 0.17 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.37 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.34 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2290202 | c.-961C>A | upstream_gene_variant | 0.22 |
kasA | 2517943 | c.-172A>T | upstream_gene_variant | 0.12 |
kasA | 2518978 | c.864T>C | synonymous_variant | 0.11 |
ahpC | 2726541 | p.Glu117Gln | missense_variant | 0.11 |
folC | 2747767 | c.-169A>G | upstream_gene_variant | 0.2 |
alr | 3841546 | c.-126C>A | upstream_gene_variant | 0.17 |
clpC1 | 4039730 | c.975C>G | synonymous_variant | 0.22 |
embC | 4241652 | p.Ala597Val | missense_variant | 0.29 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.17 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.18 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.2 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.2 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.18 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.2 |
embB | 4249649 | p.Ala1046Ser | missense_variant | 0.12 |
aftB | 4268868 | c.-32G>A | upstream_gene_variant | 0.14 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-6_*1408del | transcript_ablation | 1.0 |