Run ID: ERR2229373
Sample name:
Date: 31-03-2023 17:07:58
Number of reads: 1576537
Percentage reads mapped: 98.93
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.25 |
mshA | 576111 | p.Ala255Gly | missense_variant | 0.25 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673357 | c.-83G>A | upstream_gene_variant | 0.15 |
fabG1 | 1673359 | c.-81T>C | upstream_gene_variant | 0.15 |
fabG1 | 1673361 | c.-79C>G | upstream_gene_variant | 0.17 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.27 |
inhA | 1674929 | p.Cys243Tyr | missense_variant | 0.14 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102389 | c.654G>C | synonymous_variant | 0.17 |
ndh | 2102392 | c.651C>A | synonymous_variant | 0.17 |
ndh | 2102401 | c.642T>C | synonymous_variant | 0.2 |
ndh | 2102407 | c.636T>C | synonymous_variant | 0.18 |
PPE35 | 2167865 | c.2748G>C | synonymous_variant | 0.15 |
PPE35 | 2167868 | c.2745A>C | synonymous_variant | 0.14 |
PPE35 | 2167965 | p.Ala883Gly | missense_variant | 0.17 |
PPE35 | 2167967 | c.2646A>C | synonymous_variant | 0.17 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.53 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.53 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518230 | p.Gly39Asp | missense_variant | 0.2 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
Rv3083 | 3448500 | c.-4A>G | upstream_gene_variant | 1.0 |
Rv3083 | 3448501 | c.-3G>T | upstream_gene_variant | 1.0 |
alr | 3841546 | c.-126C>A | upstream_gene_variant | 0.16 |
panD | 4044264 | c.18G>T | synonymous_variant | 0.13 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242648 | p.Leu929Arg | missense_variant | 0.14 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.29 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.57 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.68 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.68 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.45 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.45 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.19 |
ubiA | 4269118 | p.Glu239Gly | missense_variant | 0.12 |
ubiA | 4269187 | p.Thr216Asn | missense_variant | 0.14 |
ubiA | 4269198 | p.Ser212Arg | missense_variant | 0.15 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-6_*1408del | transcript_ablation | 1.0 |